KEGG   Pan troglodytes (chimpanzee): 452653Help
Entry
452653            CDS       T01005                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    452653 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ptr03400]
    452653 (LIG4)
Enzymes [BR:ptr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     452653 (LIG4)
DNA repair and recombination proteins [BR:ptr03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     452653 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase APG17 mRNA_cap_enzyme LIG3_BRCT
Motif
Other DBs
NCBI-GeneID: 452653
NCBI-ProteinID: XP_024204096
Ensembl: ENSPTRG00000006025
VGNC: 10471
LinkDB All DBs
Position
13
AA seq 923 aa AA seqDB search
MATPQETIKISFYSWDSLVHRGNGACPRPDLCSTLERIQKSKGRAEKIRHFREFLDSWRK
FHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALK
LLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIK
KSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQL
HDPSVGLSDISITLFSAFKPMLAAIANIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVY
KYFSRNGYNYTDQFGASSTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTK
FDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQA
HTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVG
GYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKP
FHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIEKIRDDK
EWHECMTLDDLEQLRGKASGKLASKHLYIGGDDEPQEKRRKAAPKMKKVIGIIEHLKAPN
LTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSKNIR
VKNIISSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFID
TDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVIND
LSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKI
LKESWVTDSIDKCELQEENQYLI
NT seq 2772 nt NT seq  +upstreamnt  +downstreamnt
atggcaaccccgcaggaaaccatcaagatctcattttacagctgggattctctggttcac
agaggtaacggagcttgcccgaggccagatttgtgttcaactttagaacgaatacagaaa
agtaaaggacgtgcagaaaaaatcagacacttcagggaatttttagattcttggagaaaa
tttcatgatgctcttcataagaaccacaaagatgtcacagactctttttatccagcaatg
agactaattcttcctcagctagaaagagagagaatggcctatggaattaaagaaactatg
cttgctaagctttatattgagttgcttaatttacctagagacggaaaagatgccctcaaa
cttttaaactacagaacacccactggaactcatggagatgctggagactttgcaatgatt
gcatattttgtgttgaagccaagatgtttacagaaaggaagtttaaccatacagcaagta
aacgaccttttagactcaattgccagcaataattctgctaaaagaaaagacctaataaaa
aagagccttcttcaacttataactcagagttcagcacttgagcaaaagtggcttatacgg
atgatcataaaggatttaaagcttggtgttagtcagcaaactatcttttctgtttttcat
aatgatgctgctgagttgcataatgtcactacggatctggaaaaagtctgtaggcaactg
catgatccttctgtaggactcagtgatatttctatcactttattttctgcctttaaacca
atgctagctgctattgcaaatattgagcacattgagaaggatatgaaacatcagagtttc
tacatagaaaccaagctagatggcgaacgtatgcaaatgcacaaagatggagatgtatat
aaatacttctctcgaaatggatataactacactgatcagtttggtgcttcttctaccgaa
ggttctcttaccccattcattcataatgcattcaaagcagatatacaaatctgtattctt
gatggtgagatgatggcctataatcctaatacacaaactttcatgcaaaagggaactaag
tttgatattaaaagaatggtagaggattctgatctgcaaacttgttattgtgtttttgat
gtattgatggttaataataaaaagctagggcatgagactctgagaaagaggtatgagatt
cttagtagtatttttacaccaattccaggtagaatagaaatagtgcagaaaacacaagct
catactaagaatgaagtaattgatgcattgaatgaagcaatagataaaagagaagaggga
attatggtaaaacaacctctatccatctacaagccagacaaaagaggtgaagggtggtta
aaaattaaaccagagtatgtcagtggactaatggatgaattggacattttaatcgttgga
ggatattgggggaaaggatcacggggtggaatgatgtctcattttctgtgtgcagtagca
gagaagccccctcctggtgagaagccgtctgtgtttcatactctctctcgtgttggctct
ggctgcaccatgaaagaactgtatgatctgggtttgaaattggccaagtattggaagccg
tttcatagaaaagctccaccaagcagcattttatgtggaacagagaagccagaagtgtac
attgaaccttgtaattctgtcattgttcagattaaggcagcagagatcgtacccagtgat
atgtataaaactggctgcaccttgcgttttccacgaattgaaaagataagagatgacaag
gagtggcatgagtgcatgaccctggacgacctagaacaacttagggggaaggcatctggt
aagctcgcatctaaacacctttatataggtggtgatgatgaaccacaagaaaaaaggcgg
aaagctgccccaaagatgaagaaagttattggaattattgagcacttaaaagcacctaac
cttactaacgttaacaaaatttctaatatatttgaagatgtagagttttgtgttatgagt
ggaacagatagccagccaaagcctgacctggagaacagaattgcagaatttggtggttat
atagtacaaaatccaggcccagacacgtactgtgtaattgcagggtctaagaacatcaga
gtgaaaaacataatttcgtcaaataaacatgatgtcgtcaagcctgcatggcttttagaa
tgttttaagaccaaaagctttgtaccatggcagcctcgctttatgattcatatgtgccca
tcaaccaaagaacattttgcccgtgaatatgattgctatggtgatagttatttcattgat
acagacttgaaccaactgaaggaagtattctcaggaattaaaaattctaacgagcagact
cctgaagaaatggcttctctgattgctgatttagaatatcggtattcctgggattgctct
cctctcagtatgtttcgacgccacaccgtttatttggactcgtatgctgttattaatgac
ctgagtaccaaaaatgaggggacaaggttagctattaaagccttggagcttcggtttcat
ggagcaaaagtagtgtcttgtttagctgagggagtgtctcatgtaatcattggggaagat
catagtcgtgttgcagattttaaagcttttagaagaacttttaagagaaagtttaaaatc
ctaaaagaaagttgggtaactgattcaatagacaagtgtgaattacaagaagaaaaccag
tatttgatttaa

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