Pseudoalteromonas tunicata: PTUN_a1239
Help
Entry
PTUN_a1239 CDS
T05187
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
ptu
Pseudoalteromonas tunicata
Pathway
ptu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTUN_a1239 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptu03019
]
PTUN_a1239 (deaD)
03009 Ribosome biogenesis [BR:
ptu03009
]
PTUN_a1239 (deaD)
Messenger RNA biogenesis [BR:
ptu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTUN_a1239 (deaD)
Ribosome biogenesis [BR:
ptu03009
]
Prokaryotic type
rRNA helicases
PTUN_a1239 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
ThylakoidFormat
AAA_22
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATC93896
LinkDB
All DBs
Position
I:complement(1133614..1135443)
Genome browser
AA seq
609 aa
AA seq
DB search
MSEPVTFSSLNLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFA
LPLLNNIDATVKHPQVLVLAPTRELAIQVAEAFEQYAQFIKGINVLALYGGQSYNVQLSG
LRNGPQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQK
QTCLFSATMPQQIQKICSTYLEDAEHVHISARNSTVESVEQVYWQANTHKNNAIIRFLQA
ETYDGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERHLLRNIIQ
HTKSTINNVDMPSTALVEEKRIQQLAIKVAASAEQKDILFYNELAEKLSEQLGLVGTDLA
GALLYLAQQSAPIKVKEVAIHREARNDRDGKSRERSARPERDGRARREERAPREPRRDSD
KPRERRNSENGPMDTYRIDIGREHGVQVKNIVGAIANEADIPSKFIGDIRLFDDHSTVQL
PLNMPAETLQHFKKVFICKRPMNLVLHNDKNHSHDKAHGTEKVHNYDKPASANRAKAVEK
RGPRAPRNK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaccagttactttttcatccttaaacttatctcctgaaatcttaaaatccgtc
gaaaaactaggttatgttacgccttctgaaatccaagcgcagtgtattccttttttatta
aatggtaaggatgttctcggactggctcaaacgggcacgggtaaaaccgcagcgtttgct
ttgccgttacttaataacatcgatgcaacagttaaacaccctcaagtactagtacttgca
ccgactcgtgagctcgcaattcaagttgctgaagcgtttgagcaatacgcccaattcatt
aaaggcattaacgtattagcattatatggtggccaaagctataacgtgcaactgagtggt
ttacgtaatggccctcaagtcattgtggcgactccaggtcgattaattgaccatttaaac
cgtggcacaattaagtttgatcatctaaaagcacttgtgcttgatgaagccgacgaaatg
ctccgcatgggctttattgaagatgttgaaaccatcatggcaaaaacaccgaaacaaaaa
caaacgtgtttgttttcggccactatgccacaacaaattcaaaagatttgcagcacttac
ttagaagatgctgaacatgttcatatctctgcgcgtaacagcacagtagaaagtgttgaa
caagtttattggcaagccaatacccataaaaacaatgctattatccgtttcttacaagct
gaaacctatgacggtgccattgtatttgtgcgcacacgtaacgataccgttgaaattgcc
gagctacttgaacaagctggtttctctgctgcaccacttaatggtgatatgaatcaacaa
gcccgtgagcgtactgttgagcgtttaaaaaatggcttacttgatattgttattgcaacc
gatgtcgctgctcgtggtttagacgttgaccgtttatcattagtaatcaattacgatatc
ccacaagattctgaagcgtatgtgcaccgtattggtcgtaccggccgtgcaggtcgtaca
ggtaaagcaattttattcgtaaaacataatgaacgtcatttattacgcaatattattcag
cataccaaatcaaccattaataatgttgatatgccaagcactgcattagttgaagaaaaa
cgcattcaacaactagcaattaaagtcgctgcaagtgcagagcaaaaagacattcttttt
tacaatgaattagctgaaaagttatctgaacaattaggcttagttggtactgatttagcg
ggtgcattattgtacttagctcagcaaagtgcaccgattaaagttaaagaagtggctatt
catcgtgaagcgcgtaatgaccgcgatggaaaatcacgtgaacgcagtgctcgcccagag
cgtgatggccgtgctcgtcgcgaagagcgtgcaccacgtgaaccgcgtcgtgattcagat
aaaccccgtgaacgtcgcaacagcgaaaatggcccaatggatacttaccgtatcgatatc
ggccgtgagcatggtgttcaggtgaaaaacattgttggtgcgattgccaatgaagctgat
attccaagtaaatttattggtgatattcgtttatttgatgatcacagtacagtgcaatta
ccactgaatatgccagcagaaacactccagcatttcaaaaaagtgtttatttgcaaacgc
ccaatgaacttggttttacacaacgataaaaaccatagtcatgataaagcccatggcact
gaaaaagtacacaattacgataaaccagcttcagccaatcgtgctaaagccgttgaaaaa
cgcgggcctcgtgcgccacgtaataagtaa
DBGET
integrated database retrieval system
