Pseudoalteromonas tunicata: PTUN_a3619
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Entry
PTUN_a3619 CDS
T05187
Symbol
rpoE
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
ptu
Pseudoalteromonas tunicata
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptu03021
]
PTUN_a3619 (rpoE)
Transcription machinery [BR:
ptu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTUN_a3619 (rpoE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_16
Sigma70_ECF
DUF1854
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
ATC95917
LinkDB
All DBs
Position
I:complement(3335362..3335901)
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AA seq
179 aa
AA seq
DB search
MFFQSEQGLIHKAKQGNKKAWFKLVKQHESVIYHYCLRMLGNQEDAIDLMQEVFLSIYKS
LDSFRFDSSFKTWIICIANRRCIEFYRKRKIELHNEEEMDSFIDVQNQNPEQQLQGSQHN
QHVIAAMNTLNVEQRSVIELKFFHHYTLEQIGELQNISTNTVKSRFYAALENLKPHLEA
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
gtgttttttcaatcagaacaagggttaatacataaagcaaagcaaggaaataaaaaggcg
tggtttaagctggttaaacagcatgaatcggtcatttatcattattgtttacgcatgttg
ggtaaccaagaagatgcaatcgatctgatgcaagaggtatttttaagcatttataaaagc
ttagatagtttccgctttgatagcagctttaaaacgtggattatttgcattgctaatcgt
cgttgtattgaattttatcgcaaacgaaaaattgagttacacaatgaagaagagatggat
tcgtttattgatgttcaaaaccagaaccctgagcagcaactgcaaggcagtcaacataat
caacatgttatagcggctatgaatacgctcaatgttgagcagcgcagtgttatagagctt
aagttttttcatcactacacacttgaacaaattggcgaattgcaaaatatttcaactaat
acggttaaatcccgtttttatgctgcgttagaaaatttaaaaccccatttggaggcttag
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