KEGG   Pseudomonas trivialis: AA957_01010Help
Entry
AA957_01010       CDS       T04006                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ptv  Pseudomonas trivialis
Pathway
ptv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ptv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AA957_01010 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ptv03400]
    AA957_01010 (ligD)
Enzymes [BR:ptv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AA957_01010 (ligD)
DNA repair and recombination proteins [BR:ptv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AA957_01010 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AKS04751
UniProt: A0A0H5A1V7
LinkDB All DBs
Position
223767..226244
Genome map
AA seq 825 aa AA seqDB search
MPKPLSDYNRKRDFGITAEPAGSAPAGKREASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGNIPAGQYGAGDVIVWDRGVWQPHDDPRK
AYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKQQWLLIKEKDPQARPADDYDIVQAQPN
SVLSNASVGKPKAKAKPKPKPKKAVATLPEQFSPQLATLVDRAPEGDWHYEIKFDGYRML
ARIRDGEVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLNGQDQREAPVEDRRAALKAALAGSRSKLLRFSEAFTAHHRD
IFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGALL
LAVNDDSGLVYAGRVGTGFDQASLKSIYAQLTPLERGTSPLEKPLTSAQARGVHWVQPTL
VGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIHEQPRTAKSMKTAKKPSGHVNITHPDR
VIDKQSGTQKQQLAQFYDSISEWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNI
KQLDQALDPGHARLMEIDSAAALIGAVQMGTVEFHTWGGTTDKIETPDLFVLDLDPDPAL
PWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDNWDTVKAFAKAIAQFMT
AQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLR
GAQQWTVANVHERLKALEVDPWAGYANRQKISKKMWDKLGTHPPQ
NT seq 2478 nt NT seq  +upstreamnt  +downstreamnt
atgccaaagcccctcagcgactacaaccgcaaacgcgacttcgggattaccgccgaaccg
gcaggcagtgcgcccgccggcaagcgcgaagcctcggcgctgtccttcgtgatccagaaa
catgacgcgcgcaacctgcactatgacttccgccttgagcttgatggcgtgttgctcagt
tgggcggtgcccaaaggcccgagcctggaccccagccagaaacgcctggccgtccacgtt
gaagatcaccccctcggctatggcagcttcgaaggcaatattccggcaggtcagtacggc
gcaggcgacgtgatcgtgtgggaccgcggggtgtggcaaccccatgacgacccgcgcaag
gcctacgccgccggcaagctcaaattcaccttggttggcgagaaactctcaggcgactgg
accctggtgcgcacgcgcctgaagggcagcggtgataaacaacaatggctgctgatcaag
gaaaaggacccacaggcacgccctgccgatgactacgatattgtccaggcccagccgaac
agcgtgctcagcaacgcctcggtcggcaaacccaaagcaaaagccaagcccaagcccaag
ccgaaaaaagctgtagccaccctccccgagcaattttccccgcaattggccacgctggtg
gaccgcgcgccagaaggcgactggcattacgaaatcaagttcgacggttaccgcatgctc
gcgcgcattcgtgacggcgaggtacgcctgttcacgcgcaacggccatgactggaccgaa
cgcctgccccgtcaggccaaggcactgcaggcgctgaaactcaaggacagctggctcgac
ggcgaggtggtcagcctcaacggcgacggcctgccggacttccaggcgctgcaaaacgcg
tttgatatcgggcgcagcctggacattgtctactacctgttcgatgcgccgttcctcaat
ggccaggaccaacgcgaggcgcctgtcgaggatcgccgcgctgccctcaaagccgcgttg
gccggcagtcgtagcaagttgctgcgtttctccgaagcattcactgcgcaccatcgcgac
atctttgaaagcgcctgcgacctggcgctggaaggcgtgatcggtaaacgcctgggcagc
ccctacgtgtcgagtcgcagtgccgattggatcaagctcaaatgccgcttgcgccaggag
ttcgtgattgtcggctacacccggccgcagggctcacgcagtggtttcggggcgctgctg
ctggcggtgaatgatgattccgggctggtgtacgccgggcgtgtgggcacaggctttgat
caggcgtcgctgaagtcgatctacgcgcaacttacgcccctggaacgcggcacgtccccc
ctggaaaaaccgctgaccagcgcccaggcccgcggcgtgcattgggtgcagccgacactg
gtaggcgaggtgcaattcgccgaatggacccgggaaggcgtggttcgccaggccgcgttt
gtcggcatgcgtactgacaaacccgctgcgcagatcattcatgagcaaccgcgcacggcc
aaatccatgaaaaccgcgaaaaaacccagcggccacgtgaacatcacccatcccgaccgc
gtaatcgataagcaaagcggtacgcaaaaacagcaactggcgcagttctacgacagcatc
agcgaatggattctgcccttcctgcgtcaccggccggtttcgctgctgagagcgcctgaa
ggcattgaaggcgaacagttcttccaaaagcattccgagcggctcgccattcctaacatc
aagcaactggaccaggcgctcgaccctggccatgcacgcctgatggaaatcgacagcgcc
gccgcattaatcggtgccgtacaaatgggcaccgtggaattccacacctggggcggcacc
accgacaagatcgaaaccccggacctgtttgtgctcgatctcgacccggacccggcactg
ccttggaaagccatgctggaagcggcgcaactcacgctgtcggtgctcgacgaactgggg
ctgcaagcgttcgtcaagaccagcggtggcaagggcctgcacctggtcgtgccactggcg
cggcgagacaattgggacaccgtcaaggcattcgcaaaggccattgcccagttcatgacc
gcgcaattgccggagcgttttactgcaacgtcagggcccaaaaaccgtgtcggcaagatc
tttatcgactacctgcgcaatgcacgaggcgccagtaccgtggcggcctactccgtgcgc
gcacggccgggattgccggtgtcggtgccggtcagtcgtgaggagttgaagggtttgcgt
ggtgcccagcaatggacggtcgccaacgtgcatgagcgtttaaaggcgttggaggttgat
ccctgggccgggtatgccaatcgccaaaaaatcagcaagaagatgtgggataaattgggc
acccatccaccgcagtga

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