Pelosinus sp. UFO1: UFO1_3837
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Entry
UFO1_3837 CDS
T03211
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
puf
Pelosinus sp. UFO1
Pathway
puf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
puf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UFO1_3837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puf03019
]
UFO1_3837
03009 Ribosome biogenesis [BR:
puf03009
]
UFO1_3837
Enzymes [BR:
puf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UFO1_3837
Messenger RNA biogenesis [BR:
puf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UFO1_3837
Ribosome biogenesis [BR:
puf03009
]
Prokaryotic type
rRNA helicases
UFO1_3837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
SWI2_SNF2
UvrD-helicase
CMS1
SecA_DEAD
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AIF53380
UniProt:
A0A075KH47
LinkDB
All DBs
Position
complement(4044903..4046357)
Genome browser
AA seq
484 aa
AA seq
DB search
MDGQNVEKYTFSKEIAKALEELGYETLTKVQEKVIPLALAQKDIVVRSQTGSGKTAAFAI
PVCEKIIIEQKNPQVLVLTPTRELAVQLKQEISNIGRFKRIRCAVVFGRQPMEVQKRELR
QRVHIVVGTPGRTLDHIERKNMNLAEVQYLIIDEADKMLDMGFIEQVEAILTVLPISRVT
MLFSATMPDKIQEICKKYMKNPIKIEVDAENPSVKNIEQAYYEVAEDEKFDLLTSLIYIE
RPDSGILFCNTRDKVETLFAKMKQKGYSCGSLHGGMEQRDRLHSIQDFKRGEYQFLIATD
VAARGIHIDDIALVVNYDMPLDNESYVHRIGRTGRAGNLGRAISFVTKNEYRTLHEIEEY
VDYKIPEQEIPNREDVAAGKLMFNQHAEIGPTLKIDKSAALNRQITRLRINAGKKTKMRP
GDILGAITTIPGIGGGDIGIIDVQDTCSYVEILGDKGDLVMDGLQETKIKGKIHKIKEVG
FSSI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggatggtcagaatgttgagaagtatacttttagtaaggaaatagctaaagcgttagag
gagttagggtacgagacactcactaaggttcaggaaaaggtaatccccttggctcttgcc
cagaaggatattgtagtgagatctcagactggtagtggtaaaacagctgcttttgccatc
cccgtttgtgaaaaaataataatcgagcaaaaaaatcctcaggtattggttcttacgcca
actagggaattagcagtacaattaaaacaggagatttccaatataggaaggtttaaaaga
attaggtgtgccgttgtttttggtagacaaccaatggaagtacaaaaaagagaattaaga
caaagggttcatattgttgttggtactccaggaagaaccttagatcacattgaaagaaaa
aatatgaatttagcagaagtgcagtatctgattattgatgaagcagacaaaatgttggat
atgggctttatcgaacaggtggaagccatcctaacagtattgcctatcagcagggtcacc
atgttattttccgctaccatgccagataagattcaagaaatatgcaaaaaatacatgaag
aatccgataaagatagaagttgatgcagaaaatccgagtgtaaaaaacattgagcaagct
tattatgaagtagcagaagatgaaaaatttgatttgcttacgagcttaatctatattgaa
agaccagatagtggtattctcttttgcaatacaagggataaggtagagactcttttcgca
aagatgaaacagaaaggttactcttgtggaagcttgcatggaggaatggaacaaagagat
cgcttgcactccattcaagattttaaaagaggagagtaccaatttctgattgcgacggat
gtggcagcaagagggattcatatagacgatatagctcttgtggttaactatgatatgcca
ctggataatgaaagttatgttcatagaattggcagaacagggcgggctgggaacttaggt
agggctatttcttttgtaactaagaatgaatataggactttgcatgagatagaggaatat
gttgattataagataccagaacaagaaattccgaatagggaagacgtggcagcaggaaaa
ttgatgtttaatcaacatgctgaaattgggcctacgttaaaaattgataaaagcgcagca
ttaaatcgacaaattactagacttaggataaatgcaggaaaaaagacgaaaatgcgtcca
ggagatatacttggggcgattactacgattccgggaattggcggaggcgatattggcatt
attgatgtccaagatacctgttcctatgttgagatccttggagataaaggagatctcgtc
atggacgggctccaagaaaccaagataaaaggcaagatacataaaataaaagaagtaggt
ttttctagtatataa
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