Pseudomonas viridiflava: CFBP1590_0548
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Entry
CFBP1590_0548 CDS
T06554
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03030
DNA replication
pvd03430
Mismatch repair
pvd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFBP1590_0548
03430 Mismatch repair
CFBP1590_0548
03440 Homologous recombination
CFBP1590_0548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvd03032
]
CFBP1590_0548
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590_0548
Enzymes [BR:
pvd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CFBP1590_0548
DNA replication proteins [BR:
pvd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CFBP1590_0548
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CFBP1590_0548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
SMS08134
UniProt:
A0A1Y6JED7
LinkDB
All DBs
Position
I:complement(495726..496439)
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AA seq
237 aa
AA seq
DB search
MNLFDWLKPRPRTAPLDNQQVQRLNALPSCAKLSDQPLRQQRWVVLDLETSGLNMNRDQV
LSIGAVVIEDGAIDLGQQFERTLLRIDHKVSPAVLIHGLAPSAIAAGSEPVEALLDFMEF
LGDSPVLGFHAPFDQHMLSRALKDSLNYRLQHPFFDVAEIAPMLCEQANLRHAGLDDWTR
FFGLHAEERHNASADALVTAELALILFSHARRQQIDSPVRLEECLGQWRRRKQSHSF
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgttcgactggctgaagcctcgccccagaaccgcaccgctggacaaccaacag
gtgcagcggctcaacgcactgccaagctgcgcgaagctgagcgaccagccattgcgccag
cagcgctgggtggtgctggatctggaaaccagcggccttaacatgaaccgcgaccaggtg
ctgtccatcggcgcggtggtgatcgaggacggcgccatcgatctgggccaacaattcgag
cgcacgctgttgcgcatcgatcacaaagtcagcccggcggtgttgattcacggcctggca
cccagtgcgattgcagcgggcagtgagccggtcgaggcgctgctggatttcatggagttt
ctgggcgacagcccggtgctggggtttcatgcgccgttcgaccagcacatgctgtcgcgt
gccttgaaagacagcctgaattaccgcctgcagcatccttttttcgacgtcgcggaaatc
gcgccgatgctctgcgagcaggccaatctgcgccacgccggactggacgactggacccgc
ttcttcggcctgcacgccgaagagcgccacaacgccagcgccgatgcactggtcaccgcc
gagctggccctgatcctcttcagccacgcccgccgtcaacagatcgacagcccggttcgt
ctggaggaatgcctgggccagtggcgcaggcgcaagcagtcgcattcgttttga
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