KEGG   Pandoraea vervacti: UC34_23225
Entry
UC34_23225        CDS       T03688                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pve  Pandoraea vervacti
Pathway
pve02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pve00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    UC34_23225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pve03021]
    UC34_23225
Transcription machinery [BR:pve03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     UC34_23225
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_24 HTH_20 GerE HTH_29 Xre-like-HTH HTH_IclR HTH_40 HTH_38 HTH_10 HTH_Crp_2 HTH_5 HTH_28 HTH_11 HTH_17 TnsD
Other DBs
NCBI-ProteinID: AJP59072
UniProt: A0A0C5KH09
LinkDB
Position
complement(5315231..5315746)
AA seq 171 aa
MPADDTLQRETTLRRLYSDHHGWLHGWLHRKTGCSHRAADLAHDTFLRLLERDPPGRLAS
PRAFLTTLAQRVLYNHWRREHIERAYLEALSQQPEAFAPSPEERAIVLETLFEIDRCLDG
LPPLVKRAFLLAQLDGLTHAEIAAALGISLATVKRHLVRAGTQCFFAMETP
NT seq 516 nt   +upstreamnt  +downstreamnt
atgcccgccgacgacacgctgcaacgcgagaccacgttgcgcagactctacagcgatcat
cacggctggcttcatggctggctgcatcgcaagactggctgctcacatcgcgcggccgac
ctcgcgcatgacactttcctgcgcctgctcgagcgcgatccgccgggcaggctcgcgtcg
ccccgcgcgtttctgacgacgctcgcccagcgtgttctctataaccactggcgacgcgaa
cacatcgagcgggcctatctcgaagccctttcccaacagcctgaagcgttcgctccctcg
ccggaggagcgcgccatcgtgctcgaaacgctgttcgagatcgatcgttgcctcgatggc
ctgccgcctctcgtcaaacgcgccttcctgctcgcgcaactcgacggccttacgcatgcc
gagatcgccgcagcgctcggcatttcgctcgcgacggtgaagcgccatctggttcgcgca
ggcacgcagtgtttcttcgcgatggagacgccgtga

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