Pandoraea vervacti: UC34_24495
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Entry
UC34_24495 CDS
T03688
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pve
Pandoraea vervacti
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pve03016
]
UC34_24495
Enzymes [BR:
pve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
UC34_24495
Transfer RNA biogenesis [BR:
pve03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
UC34_24495
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
APD11454
UniProt:
A0A1J0LY59
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All DBs
Position
complement(5624980..5625573)
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AA seq
197 aa
AA seq
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MRLFLALWPGPGVRAQLHDWARSAHEECGGRVLRAQTLHLTLAFLDEVDPARLPVLLALM
QRTPLEPFTLTFDHLGYWSDRKIVWAGAQGVPDNLIATRNTLLSQWRATGARVVTQSFRP
HVSLLRHARRAPTDPYPHPLVWHCDGYVLVHSVRTPRGPHYRLLAEHHSARPDGAEGFFE
TSSEKSPMPATQYGIVG
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcttccttgctctgtggcccgggccgggcgtgcgcgcgcaacttcacgactgg
gcccgatcggctcacgaagaatgcggcggacgcgtgcttcgcgcccagaccttgcatctg
acgctcgcatttctcgacgaagtcgatcctgcgcgactgcccgtgttgcttgcgctcatg
caacgcacgccgctcgagcccttcaccctgactttcgatcatctcggctactggtccgat
cgcaaaatcgtctgggccggtgcgcagggcgtacccgataacctcatcgctacgcgcaat
accctgctctcgcaatggcgtgcaaccggcgcacgggtggtgacgcaatcgttccgtccc
cacgtctcgcttctgcgtcacgcgcgccgggcgccgacggacccgtatccgcatccgctg
gtctggcactgcgacggctacgtgctcgtgcactcggtgcgcacgccgcgcgggccgcac
tatcgcctgctcgccgaacatcacagcgcacgccccgatggggccgagggcttttttgaa
acgtcgtccgagaaatcgccgatgcccgcaacgcaatacggtatagtcggatga
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