Paenibacillus vortex: PVOR_28769
Entry
PVOR_28769 CDS
T05385
Definition
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pvo
Paenibacillus vortex
Pathway
pvo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PVOR_28769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvo03400
]
PVOR_28769
Enzymes [BR:
pvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PVOR_28769
DNA repair and recombination proteins [BR:
pvo03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PVOR_28769
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Other DBs
NCBI-ProteinID:
EFU38605
UniProt:
A0A2R9SMN1
LinkDB
Position
17543..18448
AA seq
301 aa
MGQLQNMLPKEPMAPISTEQITTGEEWGYQLKWDGVRILAGVDPSGVSLYSRKLLDKTSL
YPEVVQALSGLNERRLLLDGEVVYFHPELGRPVFQKVLQRERSRAISTHAPLFTYVLFDI
LVDGDQDLRKLPYLERHHRLKEAVSATPGLLIADLFLEGEHLWNWAEERGWEGIVMKRLS
SPYREGKKHRDWYKKKIAVNMKATAVGLIMREGRVASLVIADDEGSYIGRASLGLNEQTK
KKLLQYAESHQAGAAWHALHNDLKKEQLAWLSQPLTVQVTFLEWSQDGMMRHPKLVSIEG
V
NT seq
906 nt
+upstream
nt +downstream
nt
atgggacagctgcagaatatgctgcctaaggagccaatggccccaatctcgacggaacag
atcaccacgggtgaggagtggggataccaattgaaatgggacggcgtgcgaattctggcc
ggagtagaccctagcggcgtatctctgtactcccgtaagctgttggataaaacctccctg
tatcccgaagtcgttcaggcattatccgggctgaatgaacggcgtcttctcctggatggt
gaggttgtctactttcatccggaattaggtcgacccgtgttccagaaggttctccagcgg
gagcgatcgcgtgccatcagcacgcacgctcctctgttcacgtatgtcttgttcgacatt
ctggtggacggcgatcaggacctgcgcaagcttccttatcttgaacgccatcaccggctg
aaggaagccgtttccgccacgccgggtcttctgatcgcagatctgtttcttgagggcgag
catttatggaattgggccgaggaacgaggctgggaaggcattgtaatgaagcgcctcagc
tctccatatcgcgaaggcaagaagcatcgggattggtacaaaaagaaaattgccgttaac
atgaaagccacggctgttggactcatcatgagggagggccgcgtagccagcctggttatt
gccgatgacgagggcagctatatcggcagagcatccctcgggcttaatgaacagaccaaa
aaaaagctgctgcagtatgcggaaagccaccaggctggggccgcttggcacgcactccat
aatgacctgaaaaaagaacagcttgcctggctcagtcagccgctgacggtgcaggttaca
tttctcgagtggagtcaggacggcatgatgcgccatcccaaacttgtctcgattgagggg
gtgtaa
DBGET
integrated database retrieval system