Pseudomonas veronii: PverR02_29285
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Entry
PverR02_29285 CDS
T04853
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvr
Pseudomonas veronii
Pathway
pvr03030
DNA replication
pvr03410
Base excision repair
pvr03420
Nucleotide excision repair
pvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PverR02_29285
03410 Base excision repair
PverR02_29285
03420 Nucleotide excision repair
PverR02_29285
03430 Mismatch repair
PverR02_29285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvr03032
]
PverR02_29285
03400 DNA repair and recombination proteins [BR:
pvr03400
]
PverR02_29285
Enzymes [BR:
pvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PverR02_29285
DNA replication proteins [BR:
pvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PverR02_29285
DNA repair and recombination proteins [BR:
pvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PverR02_29285
NER (nucleotide excision repair)
GGR (global genome repair) factors
PverR02_29285
MMR (mismatch excision repair)
DNA ligase
PverR02_29285
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PverR02_29285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AQY68968
LinkDB
All DBs
Position
6399032..6400693
Genome browser
AA seq
553 aa
AA seq
DB search
MRLLIVLLLSVLTGLARAEECPDDARAQIGPLARQISLWDDSYHRLGHSPISDELYDQAR
QRLAHWQRCFPQPAALADKPLASSRGTSPHPVAHTGLDKLLDEHAVGEWLQVRQDVWVQP
KVDGVAVTLVYRQGRLHQVISRGDGLLGQDWSACAKKIPGIVQQLPEPIDLVLQGELYWR
LDDHVQSSLGGLNARSKVAGLMNRRQLSDAEAAGIGLFVWAWPDGPADFTERLATLAGWG
FIDSQRYSRPIQDIVGAARWRTYWYNHPLPFASDGVVLHQATRAPAKRWQVSAPYWAVAW
KYPAAKALALVRKVQFNIGRTGRITPILELEPVRLDDRQISRVSTGSLQRWKTLDIRPGD
QVAISLAGQVIPRLDEVVLRNETRVDIQVPNARDFHALSCWQLDPGCEEQLLSRLTWLSG
NQGLGLPHMGRETWNVLIQAGLIAGFLDWLTLDAAELANIEGFGDRSRARVLDSIQSARQ
RPFAQWLKALGVPPAARNNLEGGWQALVAKDTQAWLALDGIGPGRAAQLSAFFRDPQIQA
LAETLRVAGIDGF
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttgctgatcgttcttttactcagtgttctaaccgggttggccagggctgaagag
tgccccgatgacgcacgggcacaaatcggcccgctggctcggcaaatcagcctctgggac
gacagttaccaccggctcggccattcgcccatcagcgacgaactctacgaccaggcccgc
cagcgcctggctcactggcaacggtgtttcccgcaaccggcggcgctggccgacaagcct
ctggccagctcacggggcacctcgccgcacccggtggcccatacgggcctggacaaattg
ctcgacgaacacgccgtcggcgaatggctccaggttcgccaagatgtgtgggtccagccc
aaggtcgacggtgtcgccgtgaccctggtgtaccgccaggggcgcctgcaccaagtgatc
agccggggcgacggcttgctcggccaggactggtcggcctgcgcgaaaaaaatccccggc
atcgtccagcaactaccggagcccatcgacctggtgctgcaaggtgagctctattggcgt
ctcgacgaccatgtgcaatcaagcctgggcgggctcaatgcgcgcagcaaggtggccggt
ttgatgaaccgtcgacagttgagcgacgccgaggccgccgggatcggtctgtttgtctgg
gcctggcccgatggcccggcggacttcaccgagcgcctggccaccctggcaggttggggc
ttcatcgacagccaacgctacagccggcccatccaggacatcgtcggcgccgcccgctgg
cgcacctactggtacaaccatccactgccttttgccagtgatggcgtcgtgctgcaccag
gccacgcgcgcacccgccaagcgctggcaggtcagtgcgccttactgggcagtcgcctgg
aaataccccgccgccaaggctctcgcactggtacgcaaggtgcagttcaacatcggccgc
accgggcgcatcacccctatcctggaactcgaaccggtgcgtctggacgaccggcagatc
agccgcgtcagcaccggctccctgcaacgctggaaaaccctggatatccgccccggcgat
caggtcgccatcagcctcgccggccaggtcatcccgcgactggacgaggtggtcctgcgc
aacgagacccgagtggacatccaagtccccaacgcccgggactttcacgccctgagttgc
tggcaactggaccctggctgcgaagagcagttgctgtcgcgcctgacctggttgagcggc
aaccagggcctgggcctgccgcatatgggccgggagacgtggaacgtattgatccaggcc
ggtctaatcgcaggcttcctcgattggttgaccctcgatgcggcagagcttgctaacatt
gagggcttcggcgatcgcagccgtgcgcgggtgctcgacagtatccaaagcgcgcggcaa
cggcctttcgctcaatggctcaaagccctgggtgtaccgcctgcggcacgcaataacctg
gaaggcggctggcaggcgctggttgccaaggacacccaagcctggctggccctggatggc
atcggcccgggccgcgcggcgcaactcagcgctttttttcgcgacccgcagatacaggct
ttggctgagacactacgcgtggccggaatagacgggttttga
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integrated database retrieval system
