KEGG   Pogona vitticeps (central bearded dragon): 110090935Help
Entry
110090935         CDS       T05000                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pvt  Pogona vitticeps (central bearded dragon)
Pathway
pvt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pvt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    110090935 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvt03400]
    110090935 (LIG4)
Enzymes [BR:pvt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110090935 (LIG4)
DNA repair and recombination proteins [BR:pvt03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     110090935 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_A_C BRCT_2 DNA_ligase_IV RNA_ligase LIG3_BRCT mRNA_cap_enzyme APG17
Motif
Other DBs
NCBI-GeneID: 110090935
NCBI-ProteinID: XP_020670483
LinkDB All DBs
Position
Unknown
AA seq 911 aa AA seqDB search
MSSALASHSASQLTVASQVPFVDLCSTLERIQKCKSRPEKTRHFKDFLDSWRQFHDALHK
NQKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTP
TGSQREAGDFAIIAYFVLKPRCLKQGQLTIEQVNTLLDSVSNNNAAKRKDLVKKSLLQLI
TQTSALEQKWLIRMILKDLKLGISQQTIFSIFHPDAAELHNVTTDLEKVCRQLHNPSVCL
SDVSITLFSAFKPMLAAIANIQQIEKQMNNQSFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFVHNVFKDNVQNCILDGEMMAYNPTTEIFMQKGSRFDIKRMV
DESELQTCFCVFDVLMVNDQKLGHEMLSRRYEILNKIFTPIPGRMQVVLKCQASTRKEVV
DALNEAIDNREEGIVVKDPMSTYKPDKRGDGWLKIKPEYVSGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETPPTGEKPSVFHSICRVGSGYTMKELYDLGLKLAKYWKPYHKRDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIERIREDKEWHECMT
LNLLEQLRGKASGKLATKHLDIDIDKPQEKKRKTVSKVKKKIGLIDHFKAPDLANIYKIS
NMFEDIEFCVMTGAENYTKCELESKIVECGGSIVQNPGVDTYCVVAGTENVRVKNIISSN
KYDVVRVEWLLQCFQTKAFVPWQPACMIHMSPETKEHFACVYDCYGDSYTVDTDMVQLKE
VFSRMNNVGEKISWDVIADTEARYLWDCSLLNLFRQHIIYLDPLDEVSTSDTKMTQKRWL
TVALILRFHGAQVVSQLKEGVSHVIIRNHVNLERLKTVRRNFERKFKIVSEQWVKDSIKA
GQLQNENIYLM
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atgtcttctgcccttgcttcacattctgcttcccaactaactgtggcatcacaagttcct
tttgtggatctgtgttcaaccttagaacgaatacagaaatgcaaatcccgaccagagaaa
acaaggcatttcaaggattttttagattcctggaggcagtttcatgatgctcttcataaa
aatcagaaggatgtgaccgactcattttatcctgcaatgagacttattctgcctcagctg
gaaagagagaggatggcttatggaattaaagaaactatgcttgctaagctctatattgaa
ctgttaaatttacccagagatggaaaagatgcattaaaacttttaaattatcgtacgcct
actggttcacagagagaagctggagattttgctataattgcctattttgtattgaaacca
agatgtctcaagcaaggtcaactgaccatagaacaagtaaacactctgttagactctgtt
tctaacaataatgcagccaaaaggaaagacctggttaagaaaagccttcttcagttaatt
actcagacttcagcacttgaacagaaatggttgatcaggatgatcttaaaagatttgaag
cttggtataagccagcaaaccatattttctatcttccatcctgatgctgcagagctgcat
aatgttacaactgatttggagaaggtttgtaggcagttgcacaatccttctgtatgtctt
agtgatgtctcaattacattattttctgcctttaaaccaatgcttgctgctattgccaac
atacaacaaattgaaaaacaaatgaataaccaaagtttctatatagaaaccaaattagat
ggtgaacgaatgcagatgcataaagatggagatgtttacaagtatttttctcgaaatgga
tatgattacactcaacagtttggtgcatctccccttgaaggctcactgactccatttgtt
cataatgtctttaaagataatgttcagaactgcattttagatggtgaaatgatggcctac
aatcccaccacagagatcttcatgcagaagggaagcaggtttgacatcaaaagaatggta
gatgaatctgaattacagacatgcttctgtgtatttgatgtcttaatggttaatgatcag
aagctgggtcatgagatgctgagcagaaggtatgagatactcaataagatatttacacca
ataccaggtcgaatgcaggttgttcttaaatgtcaagccagcactaggaaggaagtagtg
gatgctctaaatgaagctatagataacagggaagaagggattgtggtgaaagaccccatg
tcaacttacaagccagataaacgtggggatgggtggctgaagatcaaaccagagtatgtc
agtggactgatggatgaactagaccttttaattgttggaggctactggggaaaaggcctt
cgtggtggcatgatgtcacattttttatgtgctgttgctgagactcctccaactggagaa
aaaccttctgtgtttcattccatttgccgtgttggttctggttacacaatgaaagaactg
tatgatcttggcttgaaattagcaaaatactggaagccctaccataaaagggatcctcct
tgtaatattctgtgtggcactgagaaacctgaagtctacattgaaccttgcaattcagtc
atagttcagattaaagcagctgagattgtgaatagcgatatgtacaaaactgactgtaca
ttacgtttccctcgaattgagagaataagagaagataaagaatggcatgaatgcatgact
ctcaaccttttagaacaactcagagggaaggcttctggaaagctagcaactaagcatctt
gatatagatattgataagccacaggaaaaaaaacgtaaaactgtgtcaaaggttaaaaag
aaaattggtttaatagatcattttaaagcccctgatcttgctaatatatacaaaatttcc
aatatgtttgaagatattgaattttgcgttatgactggggcagaaaattatacaaaatgt
gaactggaaagtaaaatagtggaatgtggtgggagcatagtacaaaatcctggtgtggac
acttattgtgttgttgcaggaactgaaaacgttcgtgtgaaaaatattatttcttctaac
aagtatgatgtagtgagagtagaatggcttttacagtgctttcagaccaaagcatttgtg
ccctggcagcctgcttgcatgattcatatgtccccagaaacaaaagaacacttcgcttgt
gtttatgactgctatggtgatagctatacagttgatactgatatggttcagttgaaggaa
gtattctcaagaatgaataatgtgggagaaaagatctcttgggatgtgattgctgataca
gaagcacgctatttatgggactgctctctgttaaatttgttcagacagcacatcatttat
ctggatccattggatgaagtgagcacctcagatactaagatgactcagaaaagatggttg
actgtagcgctaatacttcgatttcatggagcacaagtagtctcccagctgaaggagggt
gtgtcgcatgtaatcattagaaaccatgttaatttggaaaggctaaagacagtcagaaga
aattttgaaaggaagtttaaaattgtatctgaacagtgggtaaaggattccataaaggca
gggcagttgcaaaatgaaaatatttacttaatgtag

DBGET integrated database retrieval system