Phaseolus vulgaris (common bean): PHAVU_002G252300g
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Entry
PHAVU_002G252300g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K10610
DNA damage-binding protein 1
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03420
Nucleotide excision repair
pvu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
PHAVU_002G252300g
09124 Replication and repair
03420 Nucleotide excision repair
PHAVU_002G252300g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvu04121
]
PHAVU_002G252300g
03400 DNA repair and recombination proteins [BR:
pvu03400
]
PHAVU_002G252300g
Ubiquitin system [BR:
pvu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
PHAVU_002G252300g
DNA repair and recombination proteins [BR:
pvu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
PHAVU_002G252300g
TCR (transcription coupled repair) factors
Cul4-CSA complex
PHAVU_002G252300g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
18639069
NCBI-ProteinID:
XP_007159616
UniProt:
V7CQR8
LinkDB
All DBs
Position
2:complement(41895127..41908488)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLIIAKCTRIEIHLLSPQGLQPMLDVPIYG
RIATLELFRPHGETQDYLFIATERYKFCVLQWDSETSELVTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPFGPSITKAYGRVDPDGSRYLLGDHTGLLSLLVITHEKEKVTGLKTEPLGET
SIASTISYLDNAFVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSNSVRLVSSTTRELR
NEWFAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEISCLDINPI
GENPNHSQLAAVGMWTDISVRIFSLPDLNLVTKEQLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFMLNTSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEHSRTFAICSLKYNPTSGEDSEMHFVRLLDDQTFEFISTYSLDTYEYGCFIISCSFSDD
NNVYYCVGTAYVLPEENEPTKGRILVFTVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAI
NQKIQLYKWVLRDDGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFINRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKV
IKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDEISKAMDVSVEELCK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatggaactacgttgtcacagctcacaaacccaccaacgtcactcactcctgc
gtcggcaatttcaccagtcctcaagacctcaacctcattatcgcgaaatgcacgcgcatc
gagattcacttgctctcgcctcagggcttgcagcctatgttggacgtgccgatatatgga
agaattgctacgcttgaactcttccgccctcatggtgaaacacaggattatctctttatc
gcaactgaaagatacaaattttgtgttcttcaatgggattctgagacttctgagcttgtt
acccgggcaatgggggatgtttctgatcggataggacgtcccactgataacggtcagatt
ggcattattgatcctgattgtaggttgattggacttcacttgtatgatggtttgttcaaa
gttattccctttgacaataaaggacagctcaaggaagcatttaatataaggcttgaggag
ctccaagttttggatatcaaatttctttatggttgttcaaagccaaccattgtggttctt
taccaggataataaagatgctcgtcatgttaaaacatatgaggttgcactgaaggataaa
gattttgttgagggtccatggtcccagaacaatcttgataatggggctgatttattgata
ccagttcccccgccactttgtggcgtgcttattattggagaagagaccatagtatactgc
agtgctaatgctttcaaggctatcccattcggaccttcaattacaaaagcctatggacga
gttgatcctgatggttctagatatttacttggtgatcatacagggttgcttagcctactt
gtaataacccatgagaaagaaaaggttactggactaaaaactgagccccttggagagact
tccattgcatctacaatatcatacctggataatgcattcgtctacattggttcaagttac
ggagattcacagcttataaaactaaatctgcagcctgatgcaaaaggttcttatgtggaa
gtactggaaaggtatgtcaatttggggcctattgttgacttctgtgtggtagaccttgag
aggcagggccaaggtcaggttgtaacttgctctggagcctacaaggatggttctcttcgc
gttgttcgtaatgggattggaattaatgaacaggcatcagtagagcttcaaggtatcaaa
ggaatgtggtcactaagatcctcaacagatgatccttttgatacttttctggttgttagt
tttatcagtgaaacaagaatcttagcaatgaatcttgaggatgagctggaagaaactgag
attgagggattctgttctcaagtgcagacattattttgccatgatgctgttcataatcaa
cttgttcaagtcacttcaaactctgtcagactggtcagttccacaactagagagctccgc
aatgaatggttcgcaccatcaggctattcagtgaatgtagctacagcaaatgctacccag
gtgttgttggccacaggaggagggcatttagtttacctggaaattggagatggaatattg
caagaagtaaaacatgcccaactggagtatgagatttcatgtctagacataaatcccatc
ggtgaaaaccccaatcacagtcagcttgcagctgttggaatgtggacagacataagtgtt
agaattttttctcttccagacctgaatctcgtcaccaaggaacagctaggaggggagatc
atacctcgttctgttcttctttgtgcctttgaagggatatcttacttgctatgtgccctc
ggtgatggacatctcttaaacttcatgctgaacacaagtactggcgagttaacagatagg
aaaaaggtatctcttgggacacaacccattacactacggacgttctcctcgaagaatact
acccatgtattcgctgcatctgatcggccaactgtgatctacagtagtaacaaaaaatta
ctttatagtaatgtaaatctgaaggaagtgagtcacatgtgtcctttcaattctgctgct
tttccagacagtttggcaattgcgaaagaaggtgagcttactattggcaccattgatgac
atacaaaaactacatattcgctctataccgcttggagagcatgctcggcgtatctgccac
caagagcactccaggacttttgctatttgtagtttgaaatacaacccaacaagtggagaa
gactctgaaatgcactttgtccgcttactggatgaccagacttttgagttcatatcaact
tactctcttgacacatatgagtatggttgctttataattagctgctcattctcagatgat
aataatgtttattactgtgttggaactgcatatgtattgccagaggaaaatgaaccaacc
aaaggaagaattcttgtttttactgttgaagatggaaaactacagctaattgctgagaag
gagacaaaaggagctgtttattgcttgaatgcatttaatggtaaattgcttgctgctatt
aatcaaaaaattcagctgtacaaatgggtgctacgtgatgatggaacccatgaattgcag
tctgaatgtggacatcatggacacatcctagctctttatgtgcaaactagaggagatttt
attgtagtcggtgatctgatgaagtcaatttccttgttaatctataagcatgaagaaggt
gctattgaggaaagagctcgtgactacaatgcaaattggatgtcggctgttgaaatcctt
gacgatgacatttaccttggtgcggaaaataattttaatctgtttactgttcggaaaaat
agtgaaggtgccactgacgaagagcgaggtcgtcttgaagtggttggtgagtatcacctt
ggagaatttattaatcggttccggcatggctccctcgtaatgcgcttgccagattctgat
gttgggcagattccaacagttatctttggcaccattaatggtgttattggggtaattgct
tctcttccgcacgagcaatatgtgttcttggagaaacttcagtcaaatttgaggaaggta
attaaaggtgttggaggactcagccatgagcaatggaggtcatttaacaatgagaagaaa
actgttgaagccagaaactttttagatggagatttgatcgaatcatttcttgatctcaac
cgcagtaagatggatgaaatttccaaggcaatggatgtttctgtagaggagttatgcaaa
agagtagaagagttgacgaggttgcactga
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integrated database retrieval system