Pectobacterium wasabiae: A7983_06410
Help
Entry
A7983_06410 CDS
T04535
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pws
Pectobacterium wasabiae
Pathway
pws03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pws00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A7983_06410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pws03021
]
A7983_06410
03400 DNA repair and recombination proteins [BR:
pws03400
]
A7983_06410
Enzymes [BR:
pws01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A7983_06410
Transcription machinery [BR:
pws03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A7983_06410
DNA repair and recombination proteins [BR:
pws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A7983_06410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AOR62898
UniProt:
A0A1D7YZ22
LinkDB
All DBs
Position
complement(1423314..1427537)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGDVTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDAVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVMNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGSDVSGGETVANW
DPHTMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDGKGEDVLIPGTDMPAQYFLPGKTIVQLEDGVQIGAGDTLARLPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRIKIANRQLEADGKITATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
VPQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccattaactaccgtacgttcaagcctgagcgtgacggccttttctgcgcccgt
atctttgggccagtgaaagattatgagtgcttgtgcggtaagtataagcgcctgaaacac
cgcggtgttatttgtgagaagtgcggcgttgaagtgacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgttagatatgccgctgcgtgatattgagcgtgtgctttat
tttgaatcttatgtcgtggttgaaggcggcatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgaattcgacgcgaaaatg
ggtgccgaagcgatccaggctctgctgaagaacatggatctggagcaggaatgcgagcag
ttgcgtgaagagctgaccgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
attaagctgctggaagcgttcgtacagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggtactgccgccagatctgcgtccgttggttccgctggatggcggtcgtttt
gcgacttccgacctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgccttgctggataacggccgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttccgtcatcaccgttggtccatac
ctgcgtctgcaccaatgtggcctgccgaagaaaatggcactggaactgtttaaaccgttc
atctacggcaagctggaactgcgtggtcttgcgaccaccattaaagctgccaagaaaatg
gttgagcgtgaagaagccgtcgtatgggatatcctggacgaagtcatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgtacacgtaccgctgacgctggaagcccagttagaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcccctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtgctcacgggtcctaaagaagctgagcgtgtttatcgtgctggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcacggaagagatcaaaagcatcgaa
ggcgatgttacgcatcagacgtcgattattgacacgactatcggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgctgaacacttgttaccgcattttgggtctgaaaccgacagttatcttc
gctgaccagactatgtacaccggttttgcttacgcggcgcgctctggtgcttccgtaggt
atcgatgacatggttatcccggagaaaaaagccgagattatcgaagaagcagaaaccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgcgggcgaacgctacaac
aaagtgatcgatatctgggctgcggcgaacgagcgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgtggttgagcagcaggtttctttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttccatcatcgagacaccaatcacc
gcaaacttccgtgaaggtttgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtttggcggataccgcactgaaaacggcaaactccggttacttgacgcgtcgtctg
gttgacgttgcgcaggatctggttgtgaccgaggacgactgtggtacccatgaaggtatc
atgatgacgccggttatcgagggtggtgatgttaaagaaccactgcgtgagcgcgtactg
ggccgtgtaacggctgaagacgtgatcaaaccgggcaccgcggatattctggttccacgt
aacacgctgctgaacgagcagtggtgtgacatgttggaagagaactccgttgacgccgtt
aaagtacgttcagtggtaagctgcgaaaccgactttggcgtgtgcgccaattgctacggt
cgcgatctggctcgtggtcatatcatcaacaaaggtgaggctatcggggttatcgcggca
cagtccatcggtgagccaggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
agcaacgtgaagttcgttatgaacagcaacggtaaattggttattacttcacgtaatacc
gaactgaaactgatcgacgaattcggacgtactaaagaaagctataaagtgccttacggt
gcggtgatggcgaagggtgatggttcagacgttagcggtggcgaaaccgtcgcaaactgg
gacccgcataccatgccagtggtgaccgaagtgagcggtttcatccgctttgctgacatg
attgacggtcagaccattactcgccagaccgacgaactgactggtttgtcttctatcgtg
gttctggatagtgcagaacgtaccggtagcggtaaagacttgcgtccagcactgaaaatc
gttgacggcaaaggtgaagatgtactgatcccaggtactgatatgcctgctcaatacttc
ctgccgggtaaaacgattgttcagttggaagatggggtgcagattggtgccggtgataca
ttggcgcgtctccctcaggaatccagtggtaccaaggatattaccggtggtctgccacgc
gtagccgatctgttcgaagcccgtcgtccgaaagagccggcaattctggcagagatcagc
ggcatcatttccttcggtaaagaaaccaaaggcaagcgccgtctggtaatttctccgttg
gatggcagcgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaagttgtggaacgtggtgacgttgtttccgacggcccagagtctccgcacgatatc
ctgcgtctgcgtggcgtacatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgcgggtagtacggaattcctggaaggcgaacaggca
gaagtgtctcgcatcaagattgctaaccgtcagttggaagcggatggcaagatcacggca
acgtacagccgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccactcgcgtacttaccgaagcggctgttgcaggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatcccagcgggt
acgggttatgcgtaccatcaggatcgtatgcgccgccgtcaggcgggtgaagcgcctgtt
gtgcctcaggtgagtgccgatgaagcttctgctaacttggccgagctgctgaatgcaggc
tttggtagcagcgacgacgagtaa
DBGET
integrated database retrieval system
