KEGG   Pyrus x bretschneideri (Chinese white pear): 103937528Help
Entry
103937528         CDS       T03446                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03030  DNA replication
pxb03410  Base excision repair
pxb03420  Nucleotide excision repair
pxb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103937528
   03410 Base excision repair
    103937528
   03420 Nucleotide excision repair
    103937528
   03430 Mismatch repair
    103937528
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pxb03032]
    103937528
   03400 DNA repair and recombination proteins [BR:pxb03400]
    103937528
Enzymes [BR:pxb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103937528
    6.5.1.6  DNA ligase (ATP or NAD+)
     103937528
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103937528
DNA replication proteins [BR:pxb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    103937528
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     103937528
DNA repair and recombination proteins [BR:pxb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103937528
   NER (nucleotide excision repair)
    Other NER factors
     103937528
   MMR (mismatch excision repair)
    Other MMR factors
     103937528
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 103937528
NCBI-ProteinID: XP_009345748
LinkDB All DBs
Position
Unknown
AA seq 796 aa AA seqDB search
MLSRSLCSCHCLRLPSLLRLHYPIALFRPKPSSLPLISLSPQNPNLRAMSSRPSAFDALM
SGARAAAAKKKPQRSPSKKRQALDSTDPIKKPQLLPTPESAGATQDPEPVEVKAPESKEI
KEAQESSGNGGEVVPAGKKVCVVAGAKERTEELKSRMPLLKKKAGEFDPKLVANWGQGER
VPFVFVCLVFNLIDKETGRIVITDIVCNMLRTVMYTTPEDLVPVIYLAANRIAPAHEGLE
LGIGDASIVKALAEAFGTTEAHVKKQYKELGDLGRVAKESRSSQSMMRKPDALTVTKVFS
TFRQLAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGQA
AVYTEKHSTPPSHIQSPLEEAAKLVKQVYSLLPDYDKIIPALLSGGVWNLPEICNFTLGV
PVGPMLAKPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHFMENGSVEIYSRNAERNTGKY
PDVVAAVSRLKKSSVTSFVLDCEIVAYDREKQKILPFQVLSTRARKNVSLSEIKVEVCIF
AFDMLYLNGRPLIQEQLKVRRECLYDSFVEEAGFFQFATALTSNDIDEIQKFLDAAVSSS
SEGLIIKTLTKDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAF
LLACYDSNNEEFQSICKVGTGLTEAMLEERSASLRTKVIPKPKSYYRYHDTMNPDVWFEP
SEVWEVKAADLTISPVHRAAVGIVDANKGISLRFPRLIRVREDKPPELATSSEQVAELYN
AQAINHSNNQNDNEDD
NT seq 2391 nt NT seq  +upstreamnt  +downstreamnt
atgctctcacgatcactctgttcttgccattgtctacgcctcccctctctcctccgtctc
cattaccccatcgccctcttccgccctaaaccctcttcactccctctcatttccctctcc
ccccaaaaccctaatcttcgtgccatgtcctcccgcccctccgccttcgacgccctcatg
tccggcgcccgcgccgccgccgccaagaaaaagccccagcgttcgccctccaagaagcgc
caagccctagactccactgaccctatcaaaaaaccccaattgctgcctacgcccgaaagc
gccggcgcaacccaagatccagaacccgtggaagtcaaagctccggaatccaaggaaatt
aaagaagctcaagaaagttctggcaatggcggtgaggtggttccggcagggaagaaagtg
tgcgtggtggcgggtgctaaggagcggactgaggaattgaagagccgaatgccgctactg
aagaagaaagccggggaatttgacccaaaattggtggcgaattggggccagggcgagagg
gttccttttgtgtttgtttgtttagttttcaatttgattgacaaagagacgggtcggatt
gtgatcacggatattgtttgtaacatgttgaggactgtaatgtacaccacgcctgaggat
ttggtgcctgtgatttatcttgcggcgaataggattgctccggcgcatgagggtttggag
cttggaattggggatgcttcgattgttaaggcccttgcagaggcttttgggacgactgaa
gcgcatgtgaagaagcaatacaaggagctgggagatcttggtcgtgttgcaaaggaaagc
cgttcttcacaatctatgatgcgcaagcctgatgcattaactgtcaccaaggtttttagt
acatttcgtcaactagctaaggaatctgggaaggatagtcaggagaagaaaaagaaccat
atcaaggcacttcttgttgctgccactgattgtgaacctcaatatctgatccgtttgctt
cagacaaagttgcgaattggattggcagagcagactctattaactgcattgggacaagct
gcagtgtatactgaaaaacattcgacaccaccttctcatattcagagtcctctagaagag
gcagcaaagcttgttaagcaagtgtactctctgcttcctgattacgataaaatcatccct
gcccttttaagtggaggtgtatggaatcttccagagatatgcaactttactttgggcgtc
ccagttgggcctatgctagcaaaaccaactaagggggtatctgagattgtacagaagttt
caggatacagaatacacgtgtgaatacaagtacgatggagaacgtgcccagatacatttc
atggagaatggttctgttgagatatacagtcgaaatgctgaacgaaacactggaaagtat
cctgatgtggttgctgcagtgtcgaggttaaagaagtcatctgtaacatcattcgttttg
gattgtgaaattgttgcttatgaccgtgaaaagcaaaaaattctgcccttccaggtactc
agcactagagcgcgtaaaaatgtgagcttgagtgagatcaaggttgaagtctgcatattt
gcttttgatatgttgtatcttaatggccgaccacttattcaggaacaactgaaagttcgt
agagagtgtctgtatgactcttttgtggaagaagctgggttttttcagtttgccacagcc
ttaacatcaaatgatattgatgaaatacaaaagtttcttgatgctgctgtcagttcaagt
tctgagggtttaattattaaaacattgaccaaagatgctacatacgagccttcaaagcgg
tcacttaactggctgaaattgaagaaagattacatggacagtattggggactcactagac
ttggtgcctattgctgctttccatggccggggaaaacgtacaggtgtctatggtgctttc
ctcctcgcttgttatgatagcaataatgaagagtttcaaagcatttgtaaagtaggcact
ggactcactgaagcaatgcttgaagaacgttctgccagtctccgtactaaagtgataccc
aaacctaagtcatactataggtatcatgatacaatgaatccagatgtatggtttgaaccc
tcagaggtttgggaggtgaaagctgcggacctgactattagccccgttcatcgtgctgca
gttggcatagtggatgctaataagggtatttctctccggtttccacgtcttattcgagtt
cgggaagacaaacctccggagctagccacatcatctgagcaggtagccgagttgtataat
gctcaagcgatcaaccattcaaacaatcaaaatgacaacgaagatgattag

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