Pyrus x bretschneideri (Chinese white pear): 103962225
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Entry
103962225 CDS
T03446
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103962225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103962225
Enzymes [BR:
pxb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103962225
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103962225
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103962225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
zf-MYND
Motif
Other DBs
NCBI-GeneID:
103962225
NCBI-ProteinID:
XP_018506654
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MAQESGSSESPNWRLDLHFPSNAPVFGCRFQPYIHVVKPKGSFQLPPHENSFTWYREHVC
SSSNQEKVRCFVHPDKLSTIQCIVCVGQNRHTKISYYCSNTCFMAAWKKHKVHHHFADPD
PQAVKIIKSLGPYGSYPDSPGYQDDDSQPDEVVEQDGKTWIEIGSWEYYVPTEHDIGFCL
RLKFEVVDSSTRTPLCPARIEVTDPVIYPPPHPPRCTMWNSCIADLKEHSSNDVTFRVLS
YNILADYLATSGSKRHNYCPDWALSWAYRQHNLFYEIIDYDADILCLQEVQKDHFENFLK
PELAKYGYLVVYKKKKTEIFTFKSQLTVDGCATFYRKQRFKEIATYELEFNNSAKPFVDS
LDGEQKNEALRLLKDNVALVVILEMVGNEGSSDGNRPRICVVANTHIHANVQNPDVKLLQ
VVTLIHALEKIAELKIPLLICADLNSLPQSDPYTFISKARVEILPTKETDKSGILQTLKL
SHPLNLVSAYATFFQSDGVEDHQREKMDPETKEPLFTSRTPSFFGTLDYIFYTAASLRLD
SVLELLDKDLDKEGYLPSAKWSSDHIALMASFSLETSAYNLSSEPLPESLGQHPTFLHNS
KVLQES
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagaatctgggtcgtctgagtcccccaattggagactcgatctgcattttcct
tcaaatgctcctgtgttcggctgcagattccagccctacattcatgtggtcaaacccaag
ggctcttttcaattaccgcctcacgagaattctttcacctggtaccgagagcatgtttgc
tcgtcttccaatcaagagaaggttcgctgttttgtccaccctgacaagctgtccacaatt
cagtgtatagtttgtgtaggtcaaaatcggcataccaagataagttactattgctctaac
acttgttttatggctgcctggaagaagcacaaggtgcaccatcattttgcagatcctgat
ccacaagcagtgaaaattatcaagagtttagggccttatggctcctatcctgattcacct
ggctatcaggatgacgattcacaacctgatgaggtggtggaacaagatgggaaaacatgg
attgaaatcggatcttgggaatattatgtacccacggagcatgatattggattttgtctg
aggctaaaatttgaagttgttgattcttcaacgcgtacaccattgtgcccagcaagaatc
gaagtgacagatcctgtgatttatcctcctcctcatccaccgcgttgtacaatgtggaac
tcttgtatcgctgacctcaaagaacactcttctaacgatgtaacatttagggtgctgtcc
tataatattctcgctgattatcttgctactagtggtagtaagcggcacaattactgccca
gattgggctctttcatgggcatatcgtcagcacaatttattttatgagatcattgactat
gacgcagatatcttatgtctccaagaggtacagaaagatcattttgagaatttcctcaaa
cctgagttggcaaaatatggatacttggttgtatacaagaagaaaaagaccgagatattt
acgtttaagtcccagcttacagttgatggatgtgctacattttaccgcaagcaacgcttc
aaagaaattgcaacatatgagcttgagtttaataattcagcaaagccctttgtagattca
ttggatggtgaacagaaaaatgaagctctccgtctgttgaaggacaatgttgcacttgtt
gttatattagaaatggtgggaaatgagggctcttctgatggcaatcgacctagaatttgt
gtggtagcaaatacccatatacatgcaaatgtacaaaatccagacgtaaaattgttgcag
gttgtaaccctcatccatgcacttgagaaaattgccgagttgaagattcccctgctgatt
tgtgcagatttgaactctctgcctcagagtgatccttatacattcataagcaaggccaga
gttgagattcttcccaccaaggaaactgataaatcgggcatattgcaaacactcaagctt
tctcatccattgaatctggtaagtgcatatgcaactttttttcagtctgatggggtcgag
gatcaccaacgtgagaaaatggatcctgaaaccaaggaacctttgttcaccagccgcaca
ccatccttctttggaactttagattatatattctacacagctgctagcttgaggcttgac
agcgtattggagcttcttgacaaagatcttgacaaagaaggttaccttccatctgctaaa
tggtcatcagaccatattgccctcatggcaagtttttcccttgagacaagcgcttacaat
ctgagctcagaacctcttccagagagcctagggcagcacccaacatttttgcacaacagt
aaagttttacaggaaagctga
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