KEGG   Pyrus x bretschneideri (Chinese white pear): 103962225
Entry
103962225         CDS       T03446                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103962225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pxb03019]
    103962225
Enzymes [BR:pxb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     103962225
Messenger RNA biogenesis [BR:pxb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103962225
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103962225
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 zf-MYND
Other DBs
NCBI-GeneID: 103962225
NCBI-ProteinID: XP_018506654
LinkDB
Position
Unknown
AA seq 606 aa
MAQESGSSESPNWRLDLHFPSNAPVFGCRFQPYIHVVKPKGSFQLPPHENSFTWYREHVC
SSSNQEKVRCFVHPDKLSTIQCIVCVGQNRHTKISYYCSNTCFMAAWKKHKVHHHFADPD
PQAVKIIKSLGPYGSYPDSPGYQDDDSQPDEVVEQDGKTWIEIGSWEYYVPTEHDIGFCL
RLKFEVVDSSTRTPLCPARIEVTDPVIYPPPHPPRCTMWNSCIADLKEHSSNDVTFRVLS
YNILADYLATSGSKRHNYCPDWALSWAYRQHNLFYEIIDYDADILCLQEVQKDHFENFLK
PELAKYGYLVVYKKKKTEIFTFKSQLTVDGCATFYRKQRFKEIATYELEFNNSAKPFVDS
LDGEQKNEALRLLKDNVALVVILEMVGNEGSSDGNRPRICVVANTHIHANVQNPDVKLLQ
VVTLIHALEKIAELKIPLLICADLNSLPQSDPYTFISKARVEILPTKETDKSGILQTLKL
SHPLNLVSAYATFFQSDGVEDHQREKMDPETKEPLFTSRTPSFFGTLDYIFYTAASLRLD
SVLELLDKDLDKEGYLPSAKWSSDHIALMASFSLETSAYNLSSEPLPESLGQHPTFLHNS
KVLQES
NT seq 1821 nt   +upstreamnt  +downstreamnt
atggctcaagaatctgggtcgtctgagtcccccaattggagactcgatctgcattttcct
tcaaatgctcctgtgttcggctgcagattccagccctacattcatgtggtcaaacccaag
ggctcttttcaattaccgcctcacgagaattctttcacctggtaccgagagcatgtttgc
tcgtcttccaatcaagagaaggttcgctgttttgtccaccctgacaagctgtccacaatt
cagtgtatagtttgtgtaggtcaaaatcggcataccaagataagttactattgctctaac
acttgttttatggctgcctggaagaagcacaaggtgcaccatcattttgcagatcctgat
ccacaagcagtgaaaattatcaagagtttagggccttatggctcctatcctgattcacct
ggctatcaggatgacgattcacaacctgatgaggtggtggaacaagatgggaaaacatgg
attgaaatcggatcttgggaatattatgtacccacggagcatgatattggattttgtctg
aggctaaaatttgaagttgttgattcttcaacgcgtacaccattgtgcccagcaagaatc
gaagtgacagatcctgtgatttatcctcctcctcatccaccgcgttgtacaatgtggaac
tcttgtatcgctgacctcaaagaacactcttctaacgatgtaacatttagggtgctgtcc
tataatattctcgctgattatcttgctactagtggtagtaagcggcacaattactgccca
gattgggctctttcatgggcatatcgtcagcacaatttattttatgagatcattgactat
gacgcagatatcttatgtctccaagaggtacagaaagatcattttgagaatttcctcaaa
cctgagttggcaaaatatggatacttggttgtatacaagaagaaaaagaccgagatattt
acgtttaagtcccagcttacagttgatggatgtgctacattttaccgcaagcaacgcttc
aaagaaattgcaacatatgagcttgagtttaataattcagcaaagccctttgtagattca
ttggatggtgaacagaaaaatgaagctctccgtctgttgaaggacaatgttgcacttgtt
gttatattagaaatggtgggaaatgagggctcttctgatggcaatcgacctagaatttgt
gtggtagcaaatacccatatacatgcaaatgtacaaaatccagacgtaaaattgttgcag
gttgtaaccctcatccatgcacttgagaaaattgccgagttgaagattcccctgctgatt
tgtgcagatttgaactctctgcctcagagtgatccttatacattcataagcaaggccaga
gttgagattcttcccaccaaggaaactgataaatcgggcatattgcaaacactcaagctt
tctcatccattgaatctggtaagtgcatatgcaactttttttcagtctgatggggtcgag
gatcaccaacgtgagaaaatggatcctgaaaccaaggaacctttgttcaccagccgcaca
ccatccttctttggaactttagattatatattctacacagctgctagcttgaggcttgac
agcgtattggagcttcttgacaaagatcttgacaaagaaggttaccttccatctgctaaa
tggtcatcagaccatattgccctcatggcaagtttttcccttgagacaagcgcttacaat
ctgagctcagaacctcttccagagagcctagggcagcacccaacatttttgcacaacagt
aaagttttacaggaaagctga

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