KEGG   Pyrococcus yayanosii: PYCH_03680
Entry
PYCH_03680        CDS       T01543                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pya  Pyrococcus yayanosii
Pathway
pya03030  DNA replication
pya03410  Base excision repair
pya03420  Nucleotide excision repair
pya03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pya00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PYCH_03680
   03410 Base excision repair
    PYCH_03680
   03420 Nucleotide excision repair
    PYCH_03680
   03430 Mismatch repair
    PYCH_03680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pya03032]
    PYCH_03680
   03400 DNA repair and recombination proteins [BR:pya03400]
    PYCH_03680
Enzymes [BR:pya01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PYCH_03680
    6.5.1.6  DNA ligase (ATP or NAD+)
     PYCH_03680
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PYCH_03680
DNA replication proteins [BR:pya03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PYCH_03680
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PYCH_03680
DNA repair and recombination proteins [BR:pya03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PYCH_03680
   NER (nucleotide excision repair)
    Other NER factors
     PYCH_03680
   MMR (mismatch excision repair)
    Other MMR factors
     PYCH_03680
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Tcp10_C
Other DBs
NCBI-ProteinID: AEH24059
UniProt: F8AH01
LinkDB
Position
complement(301780..303546)
AA seq 588 aa
MEGDGWRDIKVVRNPYFSLRIVPTVVPMRYLELAQLYQRLEKTTLKTLKTRLVADFLKKV
PNDLLEIIPYLILGDVFPEWDERELGVGEKLLIRAVSMATGVDAKEIENSVKETGDLGES
VALAIKKRKQRSFFSQPLTIKRVYDTLVKVAEISGEGSQDKKLKYLANLFMDAEPIEAKY
LARTILGIMRTGVAEGILRDAIAEAFHVKVELVERAYMLTSDFGFVTKVAKLEGNEGLAK
VTIQVGKPIKPMLAQQAASIKDALLEMGGEAEFEIKYDGARVQVHKDGDRIIVYSRRLEN
VTRSIPEVVERLKRAIKAEKAIVEGELVAVGEDGRPLPFQYVLRRFRRKYNIEEMIEKIP
LELNLFDVLYVGGKALIDEPFIERRKTLEGIIEADGWIKVAENLITKSVEEAESFYRKAL
GMGHEGLMAKRLDSVYEPGNRGKKWLKIKPTMENLDLVIIGAEWGEGRRAHVFGSFILGA
YDPHTGEFVEVGKVGSGFTDEDLIEFTKMLKRLITKEEGKRVWFEPKVVIEVTYQEIQKS
PKYRSGFALRFPRYVALRDDKGPEDADTIERIAQLYELQERMKGKKIA
NT seq 1767 nt   +upstreamnt  +downstreamnt
atggagggagatggttggagggatataaaagttgtgcgcaacccttatttctctctccga
atagttcctacggtggtgcccatgaggtatcttgaactcgctcaactctaccagaggctc
gagaaaaccacgctcaaaactctcaaaacgaggctcgtcgcggatttcctgaagaaggtg
cccaatgacctgcttgagataattccctatctcatcctcggcgatgtcttccctgagtgg
gacgagagggagctcggggtcggtgagaagctccttataagggctgtttccatggccacc
ggggtcgatgctaaggaaattgagaattccgtgaaagagacgggcgatcttggtgagagc
gtcgccctcgccatcaagaagaggaaacagaggagcttcttctcccagccgctcacgata
aagcgggtttacgacacgctcgtaaaggtagccgagatttccggtgagggtagccaagat
aagaagctgaagtacctagctaatcttttcatggacgcggagccaattgaggccaaatac
ttagcccgcacgatccttgggattatgagaacaggtgtagcggagggaatcctcagggat
gccatagcggaggccttccacgtcaaggtggagctcgtggagagggcctacatgctcaca
agcgattttgggttcgttacgaaggttgcaaagctcgagggcaacgagggcctggcgaag
gtgaccattcaggttgggaagcccataaagccgatgcttgcccagcaggccgcgagcatc
aaggatgccctactcgagatgggcggcgaggcggagttcgagataaagtacgacggagcc
agagttcaggtgcacaaggatggggacaggataatagtctattcccgcaggctggagaac
gtcacccgttccatcccggaggtcgtcgagaggcttaagagagctataaaggctgagaag
gccatagttgagggagagctcgtggcagtgggtgaggacggcagaccgctacccttccag
tacgtcctcaggcgctttagaaggaagtacaacatcgaggagatgattgaaaagattcca
ctggagctcaacctcttcgacgtcctatacgtgggcggaaaggccctaatagacgagccc
ttcatagagaggagaaagacgctggaggggataattgaggccgatggatggataaaggtc
gccgagaatttgataacgaagagcgtcgaggaggcggagagcttttacagaaaggccctc
ggcatgggccatgagggcctgatggccaagcgtcttgactccgtctacgagcccggcaac
aggggcaagaaatggcttaagataaagccgacaatggagaacctcgatttggtcatcatt
ggcgcggaatggggcgagggaaggagggcccacgtcttcggctccttcatcctcggtgcc
tatgacccgcatacgggagagttcgtggaggtcggcaaggttgggagcggctttaccgat
gaagacctcatcgagttcaccaagatgctgaagcgcctaataactaaggaggagggcaag
agggtatggttcgagccaaaggtcgtcattgaggttacctaccaggagatacagaagagc
cccaagtacagaagtggcttcgcccttcgtttccctcgctacgtagctctcagagacgac
aaggggccggaggatgccgacacgatagagcgcatcgcccagctctacgagctccaggag
aggatgaaggggaagaagatcgcctaa

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