Pseudomonas yamanorum: AK972_0399
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Entry
AK972_0399 CDS
T05821
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AK972_0399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pym03021
]
AK972_0399
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_0399
Enzymes [BR:
pym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AK972_0399
Transcription machinery [BR:
pym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AK972_0399
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AK972_0399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AMW81199
LinkDB
All DBs
Position
422199..426272
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHLSGET
LSLELVPQRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKTLEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKSQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKMLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacgtacgccgtacctttg
cgggtaaaagtccgtctgatcatcttcgacaaagagtcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgcgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaagctcctgtactccgcgcggatc
attccgtaccgtggttcgtggttggacttcgagttcgatccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgcttggctatacc
actgagcaagtgctggatgccttctataccactaacgtattccacctgagcggcgaaacc
ctcagcctggaactggtgcctcagcgcctgcgtggtgagattgccgttctggacatccag
gacgaaaaaggcaaggtcatcgttgaagccggccgccgtattaccgcgcgccacatcaac
cagatcgaaaaagccggtatcaagacgctggaagtgcctctggactacgtcctgggtcgc
accaccgccaaggtcatcgtgcacccggccaccggcgaaatcctggctgaatgcaacacc
gagctgaacaccgagatcctggcgaaaatcgccaagtcccaggttgttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcgtctccgacaccctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagcca
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggcagaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtttccgcactgggcccg
ggcggtctgacccgtgaacgtgcaggctttgaagttcgtgacgtacacccgactcactat
ggtcgtgtatgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcttatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtgaaa
gacgcactggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaaatgctgatcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctggaacacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagctcgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtaagcaagggtgat
cgggttcagcgcagcgacatcatggcagacggtccgtccaccgatatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggttacaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagatcgtttcaccacgatccacattcaggaa
ctgacctgtgtggctcgtgacaccaagcttgggccagaggaaatcactgcagacatcccg
aacgtgggcgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggtgggtaaggtcactccgaaaggcgagacccaactg
actccggaagagaagctgttgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaagggcactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcactgtccatcgagaagactcaactcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgcaaccttcgaacgtctg
cgttccgccctggtaggccacaaggctgaaggcggcgcaggtctgaagaaaggtcaggac
atcaccgacgaagtactcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagacgctctgaacgagcagctcgaaaaggcccaggcctatatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgctaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggctaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggttgctgacctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggataccttctcc
gaccaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagtttgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
