Pseudomonas yamanorum: AK972_3308
Help
Entry
AK972_3308 CDS
T05821
Name
(GenBank) hypothetical protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pym01002
]
AK972_3308
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pym01011
]
AK972_3308
Peptidases and inhibitors [BR:
pym01002
]
Cysteine peptidases
Family C82
AK972_3308
Peptidoglycan biosynthesis and degradation proteins [BR:
pym01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
AK972_3308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AMW84108
LinkDB
All DBs
Position
complement(3684752..3686290)
Genome browser
AA seq
512 aa
AA seq
DB search
MSICLLVAPLVATAEDLLVVSPAPVQLALSQLSTVCPGLAGQVDAPSQARLQAFYQQQGD
VVLWSEGDRRAALQAQLQLLADDGLDPAHYRLPPTDATGNVLCIDIGTSQQYLQALQDLH
FGRLQQSRFEPVWHSQPAPDSDTQVLAMAEAGMQNVAQAFDQARPSAPLYLGLRSAYAAL
RQQPLQHWEAVASGPLLRPGMDDSRVPQLARRMVNGGYLSGTSAGTQYRGELVNAVKTFQ
QSHSLQADGVIGPGTVTELNISPAIRREQLRINLERFRWLSRDLEPDGVLVNVAAAQLSF
YQGGVPVWQTRLQVGRADRQTPLLKSRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLR
QQNLQVLDSQGNPLVPEQVDWSHPGNILLRQGAGPRNPLGRIVLRFPNPYSVYLHDTPSQ
PLFSKGPRAFSSGCVRVEQPLQLRDLLVSPAEKIRTEELLATETTHEFRLATPVPVLLGY
WTVQVDGKGALLYAPDIYGRDPVLMKAMESAL
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgagcatttgcctgctcgttgcaccgctggtcgcgacagccgaagacctgttggtggtg
tcaccggccccggtgcaactggcgctctcgcaattgtcgacggtttgcccaggcctggcc
gggcaggtcgatgcgccttcccaggcgcgtttgcaggcgttttatcagcagcagggcgac
gtggtgctgtggtccgaaggggatcgccgcgccgcattgcaagcccaactgcagttgctg
gccgacgatggcctggacccggctcactatagactgcctccgacggatgccacgggaaac
gtgctgtgcatcgacatcggcaccagccagcagtacctgcaagccctgcaggatctgcat
ttcggccgcttgcagcaatcgcgcttcgagcccgtctggcattcgcaaccggccccggac
tccgacacccaagtgctggccatggccgaggccggtatgcagaacgtcgcccaagctttc
gaccaggcccgtccgagcgcgccgctataccttggcctgcgcagcgcctatgccgccctg
cgccagcaaccgttgcagcattgggaggcggtggccagcggcccgctgttgcgccccggc
atggacgattcgcgagtgccgcaactggcgcggcgcatggtcaatggcggctacctgagc
ggcacctccgccggcacgcagtaccgtggcgagctggtcaacgcggtcaagaccttccag
caaagccattccctgcaagccgacggcgtgatcggcccgggcacggtcaccgagctgaac
atcagcccggccattcgccgcgaacaactgcgcatcaacctggagcggtttcgctggttg
tcccgggacctggagcccgacggcgtgttggtgaacgttgcggcggcgcaactgagtttc
taccaaggcggtgtgcccgtgtggcaaacccgcctgcaagtcggccgcgccgaccgccag
acaccgctgctgaaatcgcgcatcacccggctgaccctgaaccccacctggaccatcccg
cccaccatcatgcgcgaggacaagctgccggcgatccgactgaaccccgaatacctgcgc
cagcagaacctgcaagtgctcgacagtcagggcaacccgctggtgccggaacaggtcgac
tggtcgcaccccggcaacattttgctgcgccagggcgccggcccgcgcaacccgctgggc
cgaatcgtgctgcgctttcccaacccgtattcggtgtacttgcacgacacgccgagccag
ccgctgttttccaagggaccgcgggccttcagttcggggtgtgtgagggttgagcagccg
ttgcaattgcgggacttgctggtaagcccggcggagaagatccgcaccgaagagctgctg
gcgacggaaaccacccacgagttccggctcgccacgccggtacccgtgttgttggggtac
tggacggtgcaggtcgatggcaagggcgctttgctctacgcgccggacatttacgggcgc
gacccggtgttgatgaaagcgatggagagtgcgctctag
DBGET
integrated database retrieval system