Pseudomonas yamanorum: AK972_5408
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Entry
AK972_5408 CDS
T05821
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pym
Pseudomonas yamanorum
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pym03019
]
AK972_5408
03009 Ribosome biogenesis [BR:
pym03009
]
AK972_5408
Messenger RNA biogenesis [BR:
pym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AK972_5408
Ribosome biogenesis [BR:
pym03009
]
Eukaryotic type
Pre-60S particles
RNases
AK972_5408
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AMW86208
LinkDB
All DBs
Position
complement(5997633..5998175)
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AA seq
180 aa
AA seq
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MQNPQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHHSDAVLATMDEW
NTRTHGNSGLTQRVRDSRVSMVEAEAETIAFLEKWVPKGKSPICGNSICQDRRFLYTHMK
ALESYFHYRNLDVSTLKELAARWAPEVKDSFHKGSTHLALDDIRESIAELQHYRKHFIKF
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccacagaacctgatttggatcgatctggaaatgaccggtctgaaccctgac
accgacgtcatcatcgagatggcgaccattgtcaccgacagcaacctcaacaccttggcc
gaaggtccggtgatcgccattcaccacagcgacgcggtgctggccaccatggacgagtgg
aacacccgcacccacggcaactcgggcctgacccagcgtgtgcgcgacagccgggtgagc
atggtcgaggctgaagctgaaaccatcgccttcctggaaaagtgggtgcccaagggcaag
tcgccgatctgcggcaacagcatttgccaggatcgccgctttctatatacccacatgaag
gcgctggaaagttacttccactaccgcaatctggatgtatcgaccttgaaggagttggcc
gcgcgctgggcgccggaagtcaaagacagcttccacaagggcagcacccacctggcgctg
gacgatatccgcgagtcgattgccgagctgcagcattaccgcaagcatttcatcaagttc
tga
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