KEGG   Quercus suber (cork oak): 111993789
Entry
111993789         CDS       T05868                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03420  Nucleotide excision repair
qsu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111993789
  09124 Replication and repair
   03420 Nucleotide excision repair
    111993789
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:qsu04121]
    111993789
   03400 DNA repair and recombination proteins [BR:qsu03400]
    111993789
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:qsu04147]
    111993789
Ubiquitin system [BR:qsu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     111993789
DNA repair and recombination proteins [BR:qsu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      111993789
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      111993789
Exosome [BR:qsu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   111993789
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 111993789
NCBI-ProteinID: XP_023881386
LinkDB
Position
Unknown
AA seq 840 aa
MSLPTKRSATSTTSNNNNNNNNNSSSSSSNPNPNPTSPPPFSAMKKAKSQAAALDPKNGL
HHQDFNSSNNNSNDVVFDPSSMSVDDDFKSHDSSAPSPSPAPPRSVAANLSRKKAQPPQP
TKKLVIKLLKAKPTLPANFEEDTWAKLKSAISAIFLKQPDPIDSEILYQAVNDLCLHKLG
GNLYQRIEKECEAHVSEALQSLFGQSPDLVVFLSLVERCWQDLCDQMLLIRGIALYLDRT
YVKQTPNVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIQSERLGEAVDRTLLNHLLK
MFTALGIYAESFEKPFLECTSEFYAAEGMKFMQQSDVPDYLKHVETRLHEEHERCVLYLD
ACTRKPLIATAEKQLLERHISAILDKGFMMLMDGHRIEDLQRMYSLFSRVNALESLKQAL
SSYIRRTGQGIVMDEEKDKDMVSSLLEFKVSLDTIWEESYSKNDAFCNTIKDAFEHLINL
RQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKR
LLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPS
GIELSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLK
AEFPKGKKELAVSLFQTVVLMLFNDAERLSFQDIKDSTGIEDKELRRTLQSLACGKVRVL
QKMPKGRDVEDDDSFVFNDLFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAA
IVRIMKTRKLLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq 2523 nt   +upstreamnt  +downstreamnt
atgtctctccccaccaaacgctcagccacatccaccacctccaacaacaacaacaacaac
aacaacaactcttcttcttcttcttccaatcccaaccccaaccccacatctcctcctccc
ttctccgccatgaaaaaggccaaatcccaagccgcagctctcgaccccaaaaacggtctc
caccaccaggacttcaacagcagcaacaacaacagcaacgatgtcgttttcgacccctct
tccatgtccgtcgatgacgatttcaagtcccacgactcctccgccccttccccttcgcca
gctccgcctcgctccgtcgccgccaatttgtccagaaagaaagcccagccgcctcagccc
actaagaagcttgtcatcaagctcctcaaagccaaaccaacactgcctgcaaattttgaa
gaggatacgtgggcaaagctgaaatctgctatatctgctatatttttaaagcaacccgat
cctattgactcagagatactttatcaggctgttaatgacctttgtctacacaaattgggg
ggaaatctttatcaacggattgagaaggagtgtgaagcgcacgtatctgaagcattgcaa
tccttgtttggccaaagcccagatttggtggtttttctgtcacttgtcgagagatgctgg
caggatctttgtgaccaaatgttgttgattcgtggtatagccttgtatctagatagaaca
tatgtaaagcaaacacctaatgtgcgatcattgtgggacatgggattgcagcttttccgc
aaacatctttcattatctccagaagttgagcacaaaactgtcacaggccttttaagaatg
attcagagcgaaagattaggtgaagcagtggataggactctccttaaccatctcttgaag
atgtttactgcattaggaatttacgcagaaagctttgaaaagccatttcttgagtgcaca
tctgagttttatgctgctgaaggcatgaaattcatgcagcaatcagatgttccagattat
ctgaagcatgtagagacaaggttgcacgaggaacatgaaagatgtgtactctacctggat
gcttgtacaagaaaaccactaatagcaactgcagaaaagcaactccttgaacgccacata
tctgccattcttgataagggtttcatgatgctaatggatgggcaccgtattgaggacctt
cagaggatgtattcactgttttcaagggtcaatgcgcttgaatcgctaaagcaagccctt
agctcatatatccgcagaactgggcagggcattgtcatggatgaagagaaagacaaagat
atggtttcatcccttttagaatttaaggtttcgcttgatacaatatgggaagaaagctat
tccaagaatgatgcattttgcaacaccattaaggatgcatttgaacatctcatcaatctt
cgtcagaaccgacctgctgagctgattgcaaaatttctggatgaaaagcttcgtgctggg
aataagggtacttctgaggaagaattggagggtactcttgataaagttttggttttattc
aggtttattcagggcaaggatgtgtttgaagcattttataagaaggatcttgcaaaaagg
ctgcttttgggaaagagtgcttccattgatgctgagaaatccatgatctctaagctaaaa
acagagtgtggcagccaatttacaaacaaacttgaaggaatgttcaaagacattgaatta
tcaaaagaaataaatgaatccttcaaacaatcatcccaggccaggacaaaactcccatcc
gggattgagttgagtgtacatgttttaacaacagggtactggccaacatatccacccatg
gatgttagacttcctcatgaattgaatgtctaccaggacattttcaaggagttctacttg
agcaagtacagtgggaggcgcttaatgtggcaaaattcgttaggtcattgtgtgttaaaa
gctgaatttcctaaaggtaaaaaggagctggcagtttctctgtttcagactgttgtattg
atgctctttaatgatgctgagaggctaagctttcaagatattaaggactctactggaatt
gaggataaggaactaaggaggactttgcagtcccttgcttgtggaaaagttcgagtctta
caaaagatgcccaagggtagggacgtagaggatgatgattcatttgtgttcaatgattta
ttcactgctcctctttaccgtataaaggtaaatgcaatacagatgaaggaaacagtggag
gagaatacaagcaccaccgaacgagtttttcaggaccgtcaatatcaggttgatgctgct
attgtacgaataatgaagactagaaaactgctcagtcacacacttctgataactgaactc
ttccaacagctcaaatttccaataaagccagctgatttgaagaaacggattgaaagcctt
atcgacagggagtatctagagcgtgacaagaacaacccccagatatacaattacttggca
taa

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