Rhodoferax antarcticus: RA876_17540
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Entry
RA876_17540 CDS
T04655
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rac
Rhodoferax antarcticus
Pathway
rac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RA876_17540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rac03400
]
RA876_17540
DNA repair and recombination proteins [BR:
rac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RA876_17540
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RA876_17540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
DnaJ_CXXCXGXG
AAA_22
nSTAND3
ATPase
AAA_21
AAA_25
BCA_ABC_TP_C
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
APW47854
LinkDB
All DBs
Position
3619009..3622188
Genome browser
AA seq
1059 aa
AA seq
DB search
MNKPEDGKYLESTTDGKYLARALQHQTISIRGARTHNLKNIDLDIPRNQLVVITGLSGSG
KSSLAFDTLYAEGQRRYVESLSTYARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRS
TVGTVTEIHDYLRLLFARAGTPYCPEHHVPLQSQTVSQMVDTTLALPEGTRLMLLAPLAR
EKKGEFLDVFADMQAQGYVRFRINGVAYEFDELPALKKTEKHDIDVVIDRIKVRHAPPAR
ATTAAAATDADKDGAEESTVDADSVAAHAEFSALKQRLAESFEAALRLANGRAIVMEMHS
SLPNQNEGYRPKEHLFNAKFACPVCSYSIAELEPRLFSFNSPMGACPSCDGLGQQDFFDP
ARVVAFPTLSLASGAIKGWDRRNAYYFAMLESLAAHYKFDIDHAFETLPEAVQQAVLYGS
GEEEIKFAYAMDASAEGKKVSKKHPFEGIIPNMQRRYRETDSSVVREDLARYRSTQPCPD
CGGSRLRLEARHVKIGEGDQARAIFELSHQTLAECFSYFSSLTMHGAKGDIAAKIVREIS
LRLKFLNDVGLTYLSLDRSAETLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDN
DRLIDTLKHLRDIGNSVLVVEHDEDMMRAADQIIDLGPGAGVHGGRVMAQGTFDEVKANP
ASLTGQYLAHTLKIEVPPHRNAWLPTQAPKAFNVGKTSRFAPSPAAQRRAEREALHNATL
GDMQALKVIGASGHNLKNVDVAFPVGLFTCVTGVSGSGKSTLVNDTLYKAVARTIYRAHD
EPAEHTAIEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELLAEVPTARERGYGP
GRFSFNVSQASGGGRCEACEGDGMVKVEMHFLPDVYVPCDVCAGKRYNRETLEVLYKGKN
IAQILELTVEAAHAFFKAVPTIERKLHTLLDVGLSYIRLGQAATTLSGGEAQRVKLALEL
SKRDTGRTLYILDEPTTGLHFADIKLLLQVLHQLRDAGNTIVVIEHNLDVIKTADWLIDM
GPEGGSGGGTVVGVGTPETLAANPASHTGRYLARLVSDR
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaaacctgaagacggcaagtacctcgaatccacgactgatggcaagtaccttgcc
cgtgccctacagcaccagaccatcagtatccgtggcgcacgcacccacaacctgaaaaac
atcgacctcgacatcccgcgcaaccaactggtggtgatcaccggcttgagtggctctggc
aagtccagtctggcgtttgacacgctctacgccgaaggtcagcgccgctatgtggagagc
ttgtccacctacgcgcggcagtttttacagctgatggacaagcccgatgtggatgtgatt
gaaggcctgtcgccggccatctccattgagcaaaaagccaccagtcacaacccgcgctcc
accgtgggtaccgtgacagagattcacgattacctgcgcctgctgtttgcccgcgcgggc
acgccgtattgcccggagcatcatgtgccgctgcagtcgcaaaccgtcagccagatggtc
gataccaccctggccctgcccgagggcacccgcctgatgcttttggcaccactggcgcgc
gaaaaaaaaggcgagtttttggacgtgtttgccgacatgcaggcgcagggttatgtgcgc
tttcgcatcaacggtgtggcctatgagtttgatgagttgccggcgcttaaaaaaactgag
aagcacgacattgatgtggtcatcgaccgcatcaaggtacgccacgcgccacctgcccgc
gccacgactgctgctgccgcgacggatgcggataaggatggggccgaagaatcgacggtt
gacgcagactccgtggccgcccacgccgagttttccgcgctcaaacagcgtctggctgag
agcttcgaggccgcgctgcggctcgccaatggccgcgccattgttatggaaatgcatagc
agcttacccaatcagaacgagggctacaggccaaaagagcacttattcaacgccaagttt
gcttgcccggtgtgcagctactcgattgccgaactggagccgcgcctgttctcgttcaac
tcgccgatgggtgcctgcccgagttgtgacggcctgggccagcaagacttttttgatccg
gcgcgggtcgtcgccttcccaaccttgagcctggccagcggtgccatcaaaggctgggac
aggcgcaacgcctactactttgccatgctggaaagcctcgccgcgcattacaaatttgac
attgaccacgcgtttgagacgctgcccgaggccgttcagcaggcagtgttgtatggctcg
ggcgaggaagaaatcaagttcgcctacgccatggatgccagcgccgagggcaagaaggtc
agcaaaaagcacccgttcgagggcatcatcccgaacatgcaacgccgctaccgcgagacc
gactcgtcggtggtccgcgaagacctggcgcgttaccgcagcacccagccgtgcccggat
tgcggtggtagccgcctgcgccttgaggcacggcatgtgaagattggcgagggcgaccaa
gctcgcgccatcttcgaactcagccaccaaacgctggcggagtgtttcagctacttcagc
agcctgaccatgcacggcgccaaaggcgacattgccgccaaaattgtgcgtgaaatcagc
ctgcgcctgaaattcctcaacgacgtgggcttgacctacctgagcctagaccgcagcgcc
gagacgctcagcggcggtgagtcccagcgcatccgtctggccagccagattggctcgggc
ctgaccggcgtgatgtatgtgctggacgaaccgagcattggcctgcaccagcgcgacaac
gaccgcctgatcgacaccctgaaacacctgcgcgacattggcaacagtgtcttggtggtg
gagcacgacgaagacatgatgcgcgccgccgaccagatcattgacctagggccaggcgcc
ggtgtgcacggcgggcgcgtcatggcgcaaggcacgtttgacgaggtcaaggccaacccg
gcatcgctcaccggccagtatctggctcatactttgaagattgaggtgccgccgcatcga
aacgcctggctacccacccaagcacctaaagccttcaacgtcggcaaaaccagccggttt
gcgcccagcccggccgcgcagcggcgcgccgagcgcgaggctttgcacaacgctaccctg
ggtgacatgcaggcgctgaaggtcatcggcgccagcggccacaacctgaagaatgtcgat
gtggcctttccggtagggctgttcacctgtgtgactggcgtgtcgggctcgggcaagtcc
acgctggtcaacgacaccctttacaaagccgtggcgcgcaccatttaccgcgcgcatgat
gagccagctgaacacaccgccattgaaggcatcgagtactttgacaaggtcatcaacgtc
gaccagtcaccgattggccgcacaccgcgctccaacccggccacttacaccggcttgttt
acgccgattcgtgagctgctggccgaggtacccaccgcgcgtgagcgcggctacgggccg
gggcgcttcagcttcaacgtgagccaggccagcggcggcgggcgctgcgaagcctgcgag
ggcgacggcatggtcaaggtcgagatgcactttctgcccgacgtgtatgtgccttgcgac
gtgtgcgcgggcaagcgctacaaccgcgaaaccctggaagtgctctacaagggcaaaaac
atcgcgcagattctggagctgaccgtggaagccgcgcacgcgtttttcaaagccgtgccg
accatcgagcgcaagttgcacaccctgctcgacgtgggcctctcgtacatccgcctcggg
caagcggccacaacgctgtcgggcggggaggcgcagcgcgtgaaacttgcactggagctt
tccaaacgtgacaccgggcgcacgctctatatcttggacgaacccaccaccggcctgcac
tttgccgacatcaaactgctgctgcaggtgctgcaccagttgcgcgacgcgggcaacacg
attgtggtgattgaacacaatctggacgtgattaaaactgctgactggctgatcgacatg
ggccccgagggcggcagcggcggcggcacggtggtgggtgtgggcacgccggaaaccctg
gcggcaaatcccgccagccacaccgggcgctacctagcgcggctggtatcggacagataa
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