Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_0308
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Entry
RA0C_0308 CDS
T02107
Name
(GenBank) ATP-dependent DNA helicase recq
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA0C_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rai03019
]
RA0C_0308
03400 DNA repair and recombination proteins [BR:
rai03400
]
RA0C_0308
Enzymes [BR:
rai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA0C_0308
Messenger RNA biogenesis [BR:
rai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RA0C_0308
DNA repair and recombination proteins [BR:
rai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RA0C_0308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
AFD55299
UniProt:
E4TB40
LinkDB
All DBs
Position
complement(265943..268147)
Genome browser
AA seq
734 aa
AA seq
DB search
MTKKTYNLAEELKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIKQVFNDINSGRTKLLYVA
PESLIKEDYLDFLKQANISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA
TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKVDVEKEIVKFINKNKGKSGIVY
CLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKSVSEKEV
GLQLLNEVVGYAETSMSRRQYILYYFGEEFDPINGAGAKMDDNSVNPPKLKDVTSDFKTV
LNLIKSLEEKFKTKDLIAVLVGKETPTTKSYKLEKSEFFGIGKETSDNYWKSIIRQATVR
GYIIKDIETYGILRISDKGQKIVSGKDKEPFLIAEDREYDLAQTKADSDQVQLQGGGGLD
KVLFNQLKDLRKKIAQKQGIPPYTVFMDPSLEDMTVQYPITIEEIAKVYGVGEGKAKKFG
KEFAEFIKKYVEDNNIERPDDMVLKKVANKSSHKVFIIQNTDKKIDLEDIANAKNLSMDE
LISEMESIVYQGTKLNIDYYIEENFDEEMVDDFMEFMKESESDSMKVLLAEFGEELSDDE
VRLLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaaaacatacaatttagcagaagagctcaaaaaatattttggattttctacc
tttaaaggacagcaagaggcaattatcagtacacttcttggaggcaaagacgtatttgta
cttatgcctactggcgggggtaaatctctttgctatcagcttcctgcacttatttcagaa
ggtacagctattgtggtatctccacttattgccctgatgaaaaaccaagtagatgcagtt
aatgggctttcttctgaggaaggcgtagcacatgtacttaattcttctcttaataaaaca
cagataaagcaagttttcaatgatatcaatagcggaagaaccaaactcttgtatgtagct
cctgagtcattgataaaagaagattatttagattttttaaaacaagccaatatttctttc
gtagccatagatgaggcacattgtatctccgaatggggacacgacttccgaccagaatat
cgaaatttaaaaggtattatagataaaatagctaatgttcctgttattgctctcacagca
acagctactcctaaagtacaagacgatattcagaaaacattgggtatgtctgatgcggta
gtttttaaagaaagctttaaccgaccaaatctattttacgaagtacgcccaaaagtagat
gtagaaaaggaaattgtaaaattcatcaataaaaataaagggaagtcagggatagtttac
tgtcttagccgtaaaaaggtagaagaatttgcacagactttacaagttaatggcatcaat
gctctaccctatcacgcagggttagaccaaaaaacaagagtggctaatcaagataaattc
ttaatggaagagtgcgatgtgattgtagctaccatcgcttttggtatgggtatagataag
cctgatgttcgttttgtgatacattatgatttccctaaatctttagaaagttattaccaa
gaaacaggtagagctggtagagacggcggcgaaggacattgtttagcattctacgaccct
aaagatattgagaaattagaaaaatttttagctcaaaaatcggtttcggagaaagaagtt
ggtttacagttactaaatgaagtagtaggatatgccgaaacttctatgagtagaagacaa
tacatactctactattttggtgaagagtttgacccaattaacggtgctggtgccaaaatg
gacgacaactctgtaaatccgcctaagctaaaagatgttacaagcgattttaaaacggtt
ttaaacctcattaaaagtttagaagaaaaattcaaaactaaagacttaatcgcagtcctt
gtaggcaaagaaacgccaactaccaaatcttataagttagaaaaatctgagttctttggt
ataggtaaagagacttcggataactattggaaatctatcattagacaagctacggtaaga
ggttatatcatcaaagatatagaaacttatgggatacttaggataagtgataaaggacaa
aaaattgtttcaggaaaagacaaagaacctttcttaatcgctgaagatagagagtacgat
ttagcccaaactaaagcagattcagaccaagtacaactccaaggtggtggtggacttgat
aaagttctatttaatcagcttaaggatttaagaaagaaaatcgctcaaaaacaaggcatt
cctccttacaccgtgtttatggaccctagtttagaggatatgacggtgcaataccctatc
actatagaagaaattgcaaaggtttatggtgtaggtgagggtaaagctaaaaagtttggg
aaagaatttgccgagttcatcaaaaaatatgttgaagataacaacatagaacgccctgat
gatatggtgctaaaaaaagtagcaaacaaatctagccacaaagtgttcatcattcagaat
acagataaaaagatagatttagaagatattgctaatgctaaaaacctttcgatggacgaa
ctcatttccgaaatggaaagtatcgtttaccaaggcacaaaactcaatatagattattat
atagaggagaattttgacgaggaaatggtagatgactttatggagtttatgaaagagtct
gaaagtgatagtatgaaagtccttttagcagagtttggcgaagagttgagcgatgacgaa
gttcgcctgcttagaattaagtttattagcgatgtagccaactaa
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