Riemerella anatipestifer ATCC 11845 = DSM 15868: RA0C_0612
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Entry
RA0C_0612 CDS
T02107
Name
(GenBank) dead/deah box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rai
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
rai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA0C_0612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rai03019
]
RA0C_0612
Enzymes [BR:
rai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RA0C_0612
Messenger RNA biogenesis [BR:
rai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RA0C_0612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFD55583
UniProt:
E4T983
LinkDB
All DBs
Position
585669..587018
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AA seq
449 aa
AA seq
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MNITFADFELPEKILDILADLELFEPTPIQQKSFKPILSGRDIMGIAQTGTGKTLAYLLP
VLKNWKYNKSGNPTVLVLVPTRELVVQVAEILEKLCEKLSTRIIGVYGGKNINTQKLLFD
NGCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMREKRQN
ILFSATMTDAVDEMLDEYFANPIEISLAKSGTPLEKIQQIAFKVTNFNTKINFLQHLLDK
DKSMSKVLIFCNNKKHADYLFTKIDEIYPESFDVIHSNKSQNYRLRAMKKFEQEEVRGLI
TTDVMARGLDISDISHVINFEIPDIPEQYIHRIGRTGRADKDGIALSFITEKEEALFLDI
EILMKKEVEVQPMPEEVKINPQKIASEKEEVKMKNPVVIKLNEGGGAFHEKKAKNKKENW
GGPSKRKPPKKIGANRAQQKAKTKARKKK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaacattacttttgcagattttgaacttcccgaaaaaatactagatattttagccgat
ttggagctatttgaacctacacctatccaacagaaaagctttaaaccaatactttctggt
agagatattatggggatagcccaaacaggtactggtaaaaccctagcctacctattacct
gtactcaaaaattggaaatacaataaatcgggaaaccctactgttttagttttagttccc
actagagaacttgtagttcaggtagctgaaattttggagaaactatgtgaaaaactaagt
acaagaattattggcgtgtatggtggaaaaaacatcaacacccaaaagctactttttgat
aacggttgtgatattttggtaggaacaccagggcgagtgatggatttagccatagacaac
gctatttctttaaaagaagtccaaaaactaattattgatgagtttgatgagatgcttaac
ttaggttttcgtcctcaactcacacacatcttcgaaatgatgagagaaaagcgacaaaac
attcttttctctgcaacaatgactgatgctgttgatgaaatgctagatgaatattttgcc
aatccgatagaaatttctttagccaaatcggggacgccactggaaaaaatacagcaaatc
gcttttaaggtaactaactttaatactaaaatcaacttcttacagcatcttcttgataaa
gataaatctatgtctaaagtgttgatattttgtaacaataaaaaacacgccgactatctt
ttcactaaaatagacgaaatctaccccgaaagttttgatgtgatacactctaacaagtct
caaaactatcgtctaagagcgatgaaaaaatttgaacaagaagaagtcagagggctcatc
actaccgatgtaatggctagagggctagatatatcagacatcagccacgtgattaatttt
gaaatcccagacattccagagcaatacattcaccgtattgggcgtacaggtagggcggat
aaagacggtattgcactttctttcatcacagaaaaagaagaagccttatttcttgacatt
gaaatcttgatgaaaaaagaagtggaagttcagcctatgccagaggaagttaaaatcaat
ccacagaaaatagcttcggaaaaagaggaagtcaaaatgaaaaatcctgtggtgataaag
cttaatgaaggaggcggtgctttccacgaaaagaaagccaaaaacaagaaagaaaattgg
ggcggacctagtaaaagaaaaccacctaaaaaaattggagctaatagagctcaacaaaag
gcaaaaaccaaagctagaaaaaagaaataa
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