Rousettus aegyptiacus (Egyptian rousette): 107512471
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Entry
107512471 CDS
T06036
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ray
Rousettus aegyptiacus (Egyptian rousette)
Brite
KEGG Orthology (KO) [BR:
ray00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ray03016
]
107512471 (RTCB)
Enzymes [BR:
ray01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107512471 (RTCB)
Transfer RNA biogenesis [BR:
ray03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107512471 (RTCB)
Prokaryotic type
tRNA splicing ligases
107512471 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
107512471
NCBI-ProteinID:
XP_016003533
UniProt:
A0A7J8JKU8
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNSWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtaactacaacgatgagctgcagttcctggaaaagatcaataaaaacagctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcctgtcgaggtggcggtgtcggt
ggcttcctgcctgccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctatagggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcctttgatatgaatgaccctgaagcagtggtgtccccaggtggtgttggatttgacatc
aactgcggagtccgtttgctgagaaccaatttagatgaaagtgacgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacatccctgttggagtgggatcaaaaggtgtc
atccccatgaatgccaaagacttggaagaggccttggagatgggtgtggactggtcccta
agagaaggttacgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaataaggtctctgcgagggctaaaaagagaggccttcctcagttgggg
accctgggagcaggtaaccactacgcagaaatccaggttgtggatgagattttcaatgag
tatgctgccaagaaaatgggcattgatcataaaggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgccctagttgctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaatcgcttcc
ccggagggtcaggactacctgaaggggatggcggcggctgggaactacgcctgggtcaac
cgatcttccatgaccttcttaacccgtcaggctttcgccaaggtcttcaacacaacccct
gacgacctggacctgcacgtgatctatgatgtttctcacaacatcgccaaagtggagcag
cacgtggtggacgggaaggagcggacactgctggtgcacaggaaggggtccacccgcgcc
ttcccgcctcaccaccccctcattgccgtggactaccagctcactggacaaccagtgctc
attggtggcaccatgggaacctgtagttacgttcttactggcactgagcagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttagacaaattggcagatatgggaattgcaattcgc
gttgcctcaccaaaactggttatggaagaggctcctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgctggaatcagcaagaaggccattaaactgagaccaatt
gccgttatcaaaggatag
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