KEGG   Rhinopithecus bieti (black snub-nosed monkey): 108540136Help
Entry
108540136         CDS       T04641                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rbb  Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb03030  DNA replication
rbb03410  Base excision repair
rbb03420  Nucleotide excision repair
rbb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rbb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108540136 (LIG1)
   03410 Base excision repair
    108540136 (LIG1)
   03420 Nucleotide excision repair
    108540136 (LIG1)
   03430 Mismatch repair
    108540136 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rbb03032]
    108540136 (LIG1)
   03400 DNA repair and recombination proteins [BR:rbb03400]
    108540136 (LIG1)
Enzymes [BR:rbb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108540136 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     108540136 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108540136 (LIG1)
DNA replication proteins [BR:rbb03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108540136 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108540136 (LIG1)
DNA repair and recombination proteins [BR:rbb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108540136 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     108540136 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     108540136 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR Asp-B-Hydro_N
Motif
Other DBs
NCBI-GeneID: 108540136
NCBI-ProteinID: XP_017744599
LinkDB All DBs
Position
Un
AA seq 987 aa AA seqDB search
MSGCLQRSGRGDAEAAESSEQLTGEEKCWTGRENSGANMQRSIMSFFHPKKEGKAKKPEK
EASNSSRETEPPPKAALKEWNGVVSDSDSPVKRPGRKAARVLGSEGEEEDEALSPAKGQS
CRPYKKYNASICSWASGCFQSRWTVEEEQKPVPDCSQVSPPRPATSPENSASLSDTSPMD
SSPSGIPKRRTARKQLPKRTIQEVLEEQSADEDRESKRKKEEEEVETPEESLTEAEVATE
KEGEDRDQPTTPPKPLKTSEAGTPTESVSEPEVATRQELQEEEEQTKPPRSTPKTLSSFF
TPRKPAIKKEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKLGQKVPYLAV
ARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDG
VLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIA
RLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPP
GQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHC
KLSPGIPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQE
DNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQ
VQVCLYAFDLIYLNGQSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLE
QSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA
GRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTP
DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQ
VACLYLKQSQIQNQQGEDSGSDPEDTY
NT seq 2964 nt NT seq  +upstreamnt  +downstreamnt
atgtcggggtgtctgcagaggagcgggcgtggggacgctgaggctgccgagagctcggag
cagctgacaggcgaagaaaagtgctggacaggaagggagaattctggcgccaacatgcag
cgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcctgagaag
gaggcatccaacagcagcagagagacggagccccctccaaaggcggcactgaaagagtgg
aatggagtggtgtctgatagtgactctccagtgaagaggccagggaggaaggcggcccgg
gtcctgggcagcgaaggggaagaggaggatgaggcccttagccctgctaaaggccagtcc
tgcaggccgtacaagaagtataacgccagcatctgctcctgggcctcaggatgcttccag
tcacggtggacggtggaggaggagcagaagcctgtcccggactgctcacaggtctccccg
ccccgtcctgccacatctcctgaaaacagcgcttccctctctgacacctctcccatggac
agctccccatcagggatcccgaagcgtcgcacagctcggaagcagctcccgaaacggacc
attcaggaagtcctggaagagcagagtgcggacgaggacagagaatccaaaaggaagaaa
gaggaggaagaggtggagaccccagaagaaagcctcacagaggctgaagtggcaacagag
aaggaaggagaagacagggaccagcctaccacacctcccaagcccctaaagacctccgaa
gcagggactccaacggaaagcgtttcggagcccgaggtggccacaaggcaggaactgcag
gaggaggaagagcagaccaagcctccccgcagcactcccaagacactcagcagcttcttc
accccccggaagccagcaatcaaaaaagaagtgaaggaggaggagccaggggctccagga
aaggagggagctgctgagggacccctggacccatctggttacaatcctgccaagaacaac
taccatcccgtggaagacgcctgctggaaactgggccagaaggtcccttacctggctgtg
gcccggacgtttgagaagatcgaggaggtgtctgcccggctccggatggtggagacgctg
agcaacttgctgcgctccgtggtggccctgtcgcctccagacctcctccctgtcctatac
ctcagcctcaaccaccttgggccaccgcagcagggcctggagcttggcgtgggtgatggc
gtccttctcaaggcagtggcccaggccacaggtcggcagctggagtctgtccgggctgag
gcagccgagaagggcgacgtggggctggtggccgagaacagccgcagcacccagaggctc
atgctgccaccacctccgctcactgcttccggggtcttcagcaagttccgtgacatcgcc
aggctcactggcagtgcttccacagccaagaagatagacatcatcaaaggcctctttgtg
gcctgccgccactcagaagcccggttcatcgccaggtccctgagcggacggctgcgcctg
gggctggcagagcagtcggtgctggctgccctctcccaggctgtgagcctcacgccccca
ggccaagaattcccaccagccgtggtggatgctgggaagggcaagacagcagaggccaga
aagacatggctggaggagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgac
ctggaccgaattatccccgtgctgctggagcacggcctggaacgtctcccagagcactgc
aagctgagcccagggattcccctgaaaccaatgttggcccatcccacgcggggcgtcagc
gaggttctgaaacgctttgaggaggcagctttcacctgcgaatacaaatacgatgggcag
agggcacagatccacgccctggaaggcggggaggtgaagatcttcagcaggaatcaggaa
gacaacactggaaagtacccggacatcatcagccgcatccccaagattaaactcccatcg
gtcacatccttcatcctggacaccgaagccgtggcttgggaccgggaaaagaagcagatc
cagccattccaagtgctcaccacccgcaaacgcaaggaagtggatgcgtccgagatccag
gtgcaggtgtgtttgtacgccttcgacctcatctacctcaatggacagtccctggtacgt
gagcccctttcccggcgccggcagctgctccgggagaactttgtggagacggagggcgag
tttgtcttcgccacctctctggacaccaaggacgtcgagcagatcgccgagttcctggag
cagtcggtgaaagactcctgcgaggggctgatggtgaagaccctggatgtcgatgccacc
tacgagatcgccaagagatcgcacaactggctcaagctgaagaaggactaccttgatggc
gtgggtgacaccctggacctggtggtgatcggcgcctacctgggccgggggaagcgggcc
ggccggtacgggggcttcctgctggcctcctacgacgaggacagtgaggagctgcaggcc
atatgcaagcttggaactggcttcagcgacgaggagctggaggagcatcaccagagcctc
aaggccctggtgctgcccagcccccgcccttatgtgcggatagatggtgccgtgactccg
gaccactggctggaccccagtgctgtgtgggaggtgaagtgtgccgacctctccctctct
cccatctaccctgctgcgcggggcctggtggatagtgacaaggggatctcccttcgcttc
cctcggtttattcgagtccgtgaagacaagcagccggagcaggccaccaccagtgcacag
gtggcctgtttgtacctgaagcaaagtcagattcagaaccaacaaggcgaggactcaggc
tctgaccctgaagatacctactaa

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