Rhodobaca barguzinensis: BG454_04420
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Entry
BG454_04420 CDS
T05218
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rbg
Rhodobaca barguzinensis
Pathway
rbg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BG454_04420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbg03021
]
BG454_04420 (rpoC)
03400 DNA repair and recombination proteins [BR:
rbg03400
]
BG454_04420 (rpoC)
Enzymes [BR:
rbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BG454_04420 (rpoC)
Transcription machinery [BR:
rbg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BG454_04420 (rpoC)
DNA repair and recombination proteins [BR:
rbg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BG454_04420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATX65164
UniProt:
A0A2K8K6T8
LinkDB
All DBs
Position
932164..936393
Genome browser
AA seq
1409 aa
AA seq
DB search
MNQELTTNPFNPLAQTKNFDQIRVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLLNEEEFLDAQDQYGSDAFT
ANIGAEAIREMLSNIDLEDEAGRLREELKEAKGELKPKKIIKRLKVVEHFIESGNRPEWM
VLTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYVSMMREGMKGEGMIFASIEEVEHAL
AAGEVHLHAKIQCRVKQIDEDGNEVLRRYETTPGRLRLGALLPMNAKAPFELVNRLLRKK
DVQNVIDTVYRYCGQKESVIFCDQIMSLGFREAFRAGISFGKDDMLIPDQKWGLVNETRD
QVKEFEQQYLDGLITQGEKYNKVVDAWSKCSDAVANAMMGEISAVRRDDEGRELEPNSVY
MMSHSGARGSPAQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRTDDCGTDLYITAQAAVNDGEVVASLSERVLGRV
AAEDVTDPATGEVLVPRNTLIEEREADMLEMSGIATVKIRSPLTCEAEEGVCTKCYGRDL
ARGTLVNKGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGSQSFQEANAAGRIDLRNSQ
TIENAAGELIVTGRSMQIVIIDENNVERATFKPGYGSKLFVKDGAQVERGAKLFEWDPYT
LPIIAETTGRVRFVDLIAGLSVRDETDEATGMTQKIVTDWRSVPKGGDLKPEVILMDAET
GEPVRNEQGNPITYQMSVDAVLSVEDGQDVQAGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIICEIDGYVRFEKDYKNKRRIKIQPVDDSLEPAEYLVPKGKHIPVQEGDFV
QRGDYIMDGNPAPHDILRILGIEALANYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKW
EILDSGETTLLKGEHVDKAEFDEMNEKAAAHGLAPAKGEPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDHLVGLKENVIVGRLIPAGTGGVVTKVRQVAAERDRKVLDARR
AEAEAAAALAAPEPAEMSEADKVFGKRDS
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccacaaacccgttcaaccccttggcccagaccaagaactttgac
cagatccgtgtctcgctggcgtcgcccgagcggattttgtcttggtcttatggcgagatc
aagaagcccgaaacgatcaactaccgcacgttcaagcctgaacgtgacgggttgttctgc
gcgcgcatttttggcccgatcaaggactacgaatgcctttgcggcaaatataagcgcatg
aagtatcgcggcgttgtctgcgagaaatgcggtgtcgaagtgacgctgcaaaaagtccgc
cgcgaacggatgggccatatcgaactggccgcacctgtcgcgcatatctggtttctgaaa
tcgctgccgtcacgcatcggcctgatgctggacatgacgctgcgcgatctggaacgcatt
ttgtatttcgaaaactacgttgtgatcgaaccgggcctgaccgacctgacctatggccag
ttgctgaacgaggaagaattcctcgatgcgcaagaccagtacggctctgatgcgtttacg
gccaatatcggtgccgaagccatccgcgagatgctgtccaatattgatctggaagatgaa
gctggtcgcctgcgcgaagagctgaaagaagccaagggcgaattgaagcccaagaagatc
atcaagcggctgaaagtggtcgagcatttcattgaatccggcaaccgcccggaatggatg
gtgctgaccgtgttgcccgtcatcccgccggaactgcgcccgctggtgcctctggatggt
ggccgttttgcgacgtcggatctgaatgacctgtatcgccgcgtgatcaaccgcaacaac
cgcctcaagcgcctgatcgaactgcgcgcgcccgatatcatcgtgcgcaatgaaaagcgc
atgttgcaggaatcggtcgatgcgctatttgacaacggccgtcgtggccgcgtgatcacc
ggcaacaacaagcgcccgctgaaatcattgtccgatatgctgaagggcaagcagggtcgc
ttccgtcagaaccttctgggtaagcgggtcgatttctcgggccgttcggtcatcgtgacc
ggccccgaattgaagctgcatcaatgtggcctgcccaagaagatggcgttggagctgttc
aagcccttcatctattcgcggctggaagccaaaggtctgtcctcgactgtcaaacaggcc
aagaaactggtcgagaaagagcgccccgaagtctgggatattctggacgaggttatccgc
gagcacccggttctactgaaccgcgcgccgacgctgcaccgtctgggcattcaggcgttt
gaaccgatcctgatcgaaggcaaggcgatccagcttcacccgctggtctgttcggccttc
aacgctgactttgacggcgaccagatggctgttcacgttccgctgtcgcttgaagcccag
cttgaagcgcgcgttctgatgatgtccacgaataacgtgctgtcgcctgcaaacggggcg
ccgatcatcgtgccgtcgcaggatatggttctagggctgtattatgtctcgatgatgcgc
gaaggcatgaagggcgagggcatgatcttcgcgtcgatcgaagaggtcgagcatgctttg
gccgctggcgaagtgcatctgcacgccaagatccagtgccgcgtcaaacagattgacgaa
gatggcaacgaggttctgcgccgctatgaaacgacaccgggccgcctgcgccttggtgcg
cttctgccgatgaacgcgaaagcgccgtttgaactggtcaaccgtctgttgcgcaagaaa
gacgtgcagaatgtcatcgacacggtctaccgctattgcggtcagaaagagtcggtcatt
ttctgcgaccagatcatgagccttggcttccgcgaagcgttccgcgccgggatttccttt
ggcaaggacgacatgctgatccctgatcagaaatggggccttgtgaatgaaacccgcgat
caggtgaaggaattcgagcaacagtatctcgacggtctgatcacacagggcgagaaatac
aacaaggttgtcgatgcctggtcgaaatgttcggacgctgtggcgaatgccatgatgggc
gaaatttcggctgtgcgccgcgatgacgaaggccgcgaactggagccgaactctgtctac
atgatgtcgcattccggtgcgcgtggttcgcctgcccagatgaagcagttgggcgggatg
cgcggtctgatggccaaaccgaatggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggtgcgcggaaaggtctg
gccgataccgcgctgaagaccgcgaactctggttacctgacgcggcgtctggtggacgtg
gcgcaggattgcatcgtacgcacggatgattgtggcactgacctttatatcacagcacaa
gctgcggtgaatgacggtgaagtggtcgcgtccttgtccgagcgtgttctgggccgtgtt
gcagcagaagatgtgaccgaccccgcgaccggcgaagtgctggtgccgcgcaacacattg
atcgaggaacgcgaagccgacatgctggagatgtcggggatcgcaacggtcaagatccgc
tcgcccctgacctgtgaagcggaagagggcgtttgcaccaagtgttacgggcgcgacctt
gcacgcgggacattggtcaacaagggcgaggctgtcggcatcattgcggcgcagtcaatc
ggcgagccgggcacacagctgaccatgcggaccttccacatcggcgggatcgcgcagggc
ggcagccagtccttccaggaagcaaacgctgcgggccggatcgacttgcgcaatagccag
accatcgagaatgccgcgggcgagttgatcgtcacaggccgttcgatgcagattgtcatc
attgacgaaaacaatgtcgagcgggccactttcaagcccggctatggctccaaactgttc
gtcaaggatggtgcacaggtcgagcgtggggcgaagctgtttgaatgggacccttacacc
ctgccaatcattgcggaaaccacgggccgcgtgcgctttgtcgatctgatcgctggtctg
tcggtccgcgacgaaaccgacgaagccacaggcatgacccagaagatcgtgaccgactgg
cggtccgtgcccaagggcggtgacctcaagccagaggtcattctgatggatgcggaaact
ggcgaacctgtgcgcaacgaacagggcaacccgatcacctatcagatgtcggttgatgct
gttctgtcggtagaagacgggcaggatgtgcaggcgggtgacgttgtcgcgcgtattccg
cgcgaaggcgccaagaccaaggacatcaccggtggtctgccgcgtgtggctgaactgttt
gaggcacgtcgtcccaaggaccacgcgatcatctgtgaaatcgatggctatgtccggttc
gagaaggactacaagaacaagcgccgcatcaagattcagcctgtcgatgactcgctggag
cctgcggaatatctggtccccaagggcaagcacattccggttcaggaaggtgacttcgtc
cagcgcggcgattacatcatggatggcaaccctgccccccatgacatcctgcgtattctg
ggtatcgaggcgctggccaactacctgatcgacgaagtgcaggacgtctatcgcctgcag
ggcgtgaagatcaacgacaagcatatcgaggtgatcgtgcggcagatgctgcagaaatgg
gagatcctcgacagtggcgaaaccacgctgctgaaaggtgagcatgtcgacaaggccgag
ttcgacgagatgaacgagaaagcagcagcgcacgggctggcacctgccaagggcgagccg
atccttctggggatcaccaaggcgtcgttgcagacccgtagcttcatctctgcggcatcg
ttccaggaaacaacgcgcgtgctgaccgaagcatcggttcagggcaagcgggatcatctg
gttggcctgaaagagaacgtcatcgtgggtcgtcttatcccggctggtacgggcggcgtt
gtcaccaaggtccgtcaggtcgcggcagaacgggaccgcaaggttctggatgcgcgccgc
gccgaggccgaagccgcagcggcacttgccgcgccggaacccgccgagatgtcagaggcg
gacaaggtctttggcaagcgcgatagctaa
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integrated database retrieval system
