Rhodocyclaceae bacterium Thauera-like: B4966_13025
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Entry
B4966_13025 CDS
T05394
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rbh
Rhodocyclaceae bacterium Thauera-like
Brite
KEGG Orthology (KO) [BR:
rbh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rbh03016
]
B4966_13025
Enzymes [BR:
rbh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B4966_13025
Transfer RNA biogenesis [BR:
rbh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B4966_13025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AUM00982
UniProt:
A0A2K9LDE4
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All DBs
Position
2708518..2710425
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AA seq
635 aa
AA seq
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MFVLFEEDGAFKAGTVLADNDASLQVETTYGKRVKLKRTNVLLNFREPAPAELLARAEAE
AEQLDTEFLWEVCGEDEFAFADFAAEYHGHAPTPVEAAAVLLRLHSAPIYFHRKGKGRFR
KAPVDILQAALAGLEKKRQQAAAIERMRDELLAGRLPEEFSGMLAQLLYRPDRNRPEVKA
LEAACVEAGLPAARLLLNCGAFASSYEFHHNRFLFEHFPEGVHFPPFDFPVVCEDLPRAE
VAAFSIDDATTTEIDDAFSVSPRAAGGWRVGIHIAAPALGFARGSTLDAIARRRLSTVYM
PGNKITMLPDEVVDRFTLAAGRDCPAVSLYLDVNADLSVSGQESRIEIVPIVANLRHHDI
EPVFNEHTLHDGGPDFEWKRELTVLWDLATVLEAGRGKAAANQNQLDYSFYVDWQTGTAD
GPGYVSIVPRKRGSPMDKLVAELMILANATWGKLLDESGVPGLYRVQGGGKVRMTTTAGP
HEGLGVDCYAWSSSPLRRYVDLVNQWQLIAVLTGGEPAFAPRSTELMAALRDFELTYAAY
AEFQRQMERYWCVRWLRQQSLREVEAVVVRDNLVRLESVPLSFKVPSLPLQYPGSRVKLA
IEGSDLLDVEVHARYIATLAEPDAAENGLSFFEGS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgctgttcgaagaggacggggccttcaaggccggtaccgtgctcgctgataac
gatgcctcgctccaggtggaaaccacctacggcaaacgggtcaagctcaagcgtaccaat
gtgctgctgaactttcgcgaacccgcaccggccgagcttttggcacgcgccgaagccgag
gccgagcagctcgacaccgagttcctatgggaggtctgcggtgaggacgaattcgccttc
gccgatttcgccgccgagtaccacggccatgcgcccacccctgtggaggctgccgcggtg
ctactgcgcctgcactcggccccgatctacttccaccgcaagggcaagggccgcttccgc
aaggccccggtcgatattctgcaggctgcgctcgcgggcctggagaagaagcgccagcag
gccgcggccattgagcggatgcgcgacgagctgctcgccggacgcctgccagaggagttt
tccggcatgctggcgcagctactctaccgcccggatcgcaaccgccccgaggtgaaggct
ttggaagccgcctgcgtggaggccggcctgccggctgcccggctgctgctcaactgtggc
gcctttgcgtcgagctacgaattccaccacaaccgctttctgttcgaacacttcccggaa
ggcgtgcattttccacccttcgatttcccggtggtgtgcgaggacctgccgcgcgccgag
gtggcggctttttcgatcgacgacgccaccaccaccgagatcgacgacgctttctcagtc
agcccacgtgcagccggcggctggcgggtcggcatccatatcgctgcaccggcgctgggt
ttcgcacgcggctcgacactggacgcgatcgcccgccggcggctgtctaccgtgtacatg
ccgggcaacaagatcaccatgttgcccgacgaagtggtcgaccgtttcacgctggccgcc
ggccgcgactgcccggcagtgtcgctgtatttggatgtcaatgcggacctttcggtgtcc
ggacaggaaagccgaatcgagatcgtgcccatcgtcgccaacctgcgccaccatgacatc
gagccggtgttcaacgaacacaccttgcacgacggcggtccggatttcgagtggaagcgg
gagctgaccgtgctgtgggatctcgccacggtgctcgaggccgggcgcggcaaagcagcg
gccaaccagaaccagctcgattacagcttctatgtggattggcagaccggcaccgccgat
ggccccggctatgtcagcatcgtgccgcgcaaacgcggctcgccgatggacaaattggtc
gccgagctgatgattctggccaatgccacctggggcaagctgctggatgaatccggcgtg
cccggtctttaccgcgtacaaggcggtggcaaggtacgcatgaccaccaccgccggaccg
catgaaggcttgggcgtggattgctatgcgtggtcgagttcgccgctgcgccgctacgtg
gatctggtcaaccaatggcaactgatcgcggtgctcaccggcggtgagcctgcctttgcg
ccgcgttcgaccgagctgatggccgcactgcgtgactttgaactcacctatgccgcgtat
gccgagtttcaacgccagatggaacgttactggtgtgtgcgttggctgcgccagcagtcg
ctgcgggaggtggaagcggtggtcgtgcgcgacaatctggtgcgcctggagagcgtgcca
ctgagcttcaaagtgccttcgctgccgctgcagtacccaggcagccgggtcaagctggcc
atcgaaggcagcgatctgctcgatgtcgaagtgcacgcacgctacatcgccacgctggcc
gagccggacgctgcggaaaacggtttgtcattcttcgaaggatcgtag
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