KEGG   Rubrivivax benzoatilyticus: RBXJA2T_12197Help
Entry
RBXJA2T_12197     CDS       T04092                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rbn  Rubrivivax benzoatilyticus
Pathway
rbn03030  DNA replication
rbn03410  Base excision repair
rbn03420  Nucleotide excision repair
rbn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rbn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RBXJA2T_12197
   03410 Base excision repair
    RBXJA2T_12197
   03420 Nucleotide excision repair
    RBXJA2T_12197
   03430 Mismatch repair
    RBXJA2T_12197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rbn03032]
    RBXJA2T_12197
   03400 DNA repair and recombination proteins [BR:rbn03400]
    RBXJA2T_12197
Enzymes [BR:rbn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RBXJA2T_12197
    6.5.1.6  DNA ligase (ATP or NAD+)
     RBXJA2T_12197
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RBXJA2T_12197
DNA replication proteins [BR:rbn03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    RBXJA2T_12197
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     RBXJA2T_12197
DNA repair and recombination proteins [BR:rbn03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RBXJA2T_12197
   NER (nucleotide excision repair)
    Other NER factors
     RBXJA2T_12197
   MMR (mismatch exicision repair)
    Other MMR factors
     RBXJA2T_12197
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M TAT_signal
Motif
Other DBs
NCBI-ProteinID: EGJ11086
UniProt: F3LRW8
LinkDB All DBs
AA seq 280 aa AA seqDB search
MPFSRRDFLAAALACVGLSARVAAAVSPPAVMLAREARQGLDPAGFLVSEKLDGVRAVWD
GRRLRFRSGREVVAPPGFVARLPPVPLDGELWLGRGAFDAVSGLVRRESPDDAGWRALRY
GVFDLPGVPGPFAERARRLAELARGTNAFFAVEQRSVASASALNVWLDEVVTGGGEGLVL
HRADALWLPGRSDALLKLKPQQDAEAVVVGHVGGQGRLEGRMGALRVRADDGTEFLLGTG
FSDAERAAPPPVGTVVSYRYRGRTAGGLPRFASFLRVREF
NT seq 843 nt NT seq  +upstreamnt  +downstreamnt
atgccgttcagtcgacgtgatttcctcgcggccgcgctggcctgcgtcggcctgtcggcc
cgggtggccgcggccgtgtcaccgccggccgtgatgctggcgcgcgaagcccggcagggc
ctggatccggccgggttcctggtgagcgagaagctcgacggcgtgcgcgccgtctgggac
ggccgccggctgcgctttcgcagcggccgcgaggtcgtcgcaccgccgggtttcgtcgcc
cgtctgccaccggtgccgctggacggcgagctgtggctgggccgcggcgccttcgacgcc
gtctcgggcctggtgcggcgcgagtcgcccgacgacgccggctggcgcgcgctgcgttac
ggcgtcttcgacctgcctggcgtgccggggccgttcgccgagcgtgcgcgccgcttggcc
gagttggcgcgcggcacgaacgcgttcttcgcggtcgagcagcgcagcgtcgcctcggcc
tcggcgctcaacgtctggctcgacgaggtcgtgaccggcggcggcgaaggcctggtgctg
caccgtgccgacgcgctctggttgcccggccgcagcgacgcgctgctcaagctcaagccg
cagcaggacgccgaagcggtggtcgtcggccacgtcggcggccaggggcggctcgaaggc
cggatgggcgccttgcgcgtgcgcgccgacgacggcaccgagttcctgctcggcaccggc
ttcagcgacgccgaacgcgcggcgccaccgccggtcggcacggtcgtcagctaccgctac
cgcgggcgcacggccggcgggctgccgcgtttcgccagcttcctgcgcgtgcgcgagttc
tga

DBGET integrated database retrieval system