KEGG   Rugosibacter aromaticivorans: PG1C_06060Help
Entry
PG1C_06060        CDS       T03689                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rbu  Rugosibacter aromaticivorans
Pathway
rbu03030  DNA replication
rbu03410  Base excision repair
rbu03420  Nucleotide excision repair
rbu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rbu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PG1C_06060
   03410 Base excision repair
    PG1C_06060
   03420 Nucleotide excision repair
    PG1C_06060
   03430 Mismatch repair
    PG1C_06060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rbu03032]
    PG1C_06060
   03400 DNA repair and recombination proteins [BR:rbu03400]
    PG1C_06060
Enzymes [BR:rbu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PG1C_06060
    6.5.1.6  DNA ligase (ATP or NAD+)
     PG1C_06060
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PG1C_06060
DNA replication proteins [BR:rbu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PG1C_06060
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PG1C_06060
DNA repair and recombination proteins [BR:rbu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PG1C_06060
   NER (nucleotide excision repair)
    Other NER factors
     PG1C_06060
   MMR (mismatch exicision repair)
    Other MMR factors
     PG1C_06060
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AJP48142
UniProt: A0A0C5IZG2
LinkDB All DBs
Position
1240036..1240965
Genome map
AA seq 309 aa AA seqDB search
MVLVASWAFLFVAGFWVSVGGMAVLPAEAAATAAEETFPVPSIDAAKKTEMLLAKVWQHG
RDPAAFWVSEKLDGVRAIWDGHQLRFRSGRIVPAPDWFTAVLPAQPLDGELWLGRGAFDA
LSAIVRKTPPVDAEWRQVRYMIFELPELSGVPGASGSFTQRVEQMRVVVDQAKIPWLQGV
PQFRVANAAQLMARYREVIAGGGEGLMLHRADALYHTGRSDDLLKLKPAEDAEAVVIGYL
PGKGRYTGMVGALLVENAEGKRFRIGSGLDEATRRHPPAVGATITYRYQQLSVNGIPRFP
RYWRVRDAL
NT seq 930 nt NT seq  +upstreamnt  +downstreamnt
atggttttagtggcttcttgggcttttttatttgtggccggtttttgggtttcggtgggg
ggtatggctgtgctgcctgccgaggctgcggcgactgcagcggaagaaacgtttcccgtg
ccatcgatcgacgcagcaaagaaaacagagatgttgctagccaaggtatggcagcatggc
cgcgacccggcagcgttttgggtgagtgaaaaactggatggtgtacgtgcgatatgggat
ggtcatcagttgcgctttcgcagcgggcgcatcgtgcctgcacccgactggtttactgcc
gttttgcccgcacagccactggatggcgagctttggctggggcgtggcgcattcgatgcg
ctctcggccatcgtgcgtaaaactcccccggtggatgccgaatggcgtcaggtgcgttac
atgattttcgagctgcctgagctgtcgggagtgccgggtgcctcggggagttttacccag
cgcgttgagcagatgcgggtggtagtcgaccaagcgaaaattccctggttgcagggggtg
ccgcagtttcgggtggcgaatgctgcgcaactcatggcgcgctatcgcgaagtgatagcc
ggtggcggggaaggcctcatgctgcatcgtgccgatgcgctgtatcacacggggcgcagc
gatgatctgctgaaactcaaaccggcagaagacgctgaggcggtggtcattggctatctc
cccggtaaagggcgttacacaggcatggtgggcgcgcttctggttgaaaatgcagaagga
aaacgcttccgcattggcagcgggctggatgaggcaacgaggcgccatccccccgccgtg
ggcgctaccattacctatcgctatcagcagttgagcgtcaatggcatccctcgttttccg
cggtactggcgggtgcgcgatgcactatga

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