Roseiflexus castenholzii: Rcas_0873
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Entry
Rcas_0873 CDS
T00585
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rca
Roseiflexus castenholzii
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rca03016
]
Rcas_0873
Enzymes [BR:
rca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Rcas_0873
Transfer RNA biogenesis [BR:
rca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Rcas_0873
Prokaryotic type
tRNA splicing ligases
Rcas_0873
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
GP11
Motif
Other DBs
NCBI-ProteinID:
ABU56989
UniProt:
A7NHP2
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All DBs
Position
1142098..1143324
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AA seq
408 aa
AA seq
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MFQIIDGIPVWGEHDEATIEQIRRCARDPEAVKAALMADGHVGYSMPIGGVVAYRDAVSP
SGVGYDISCGIKGVRTNLRADDIRKDIGKIMDQVAREVVFGVGSTSGKAANHPLFDDPTW
RDIPEVGKLRQMAREQLGTVGSGNHWVDILEDEEGWVWVAAHFGSRGLGHRIASGFLNLA
HGRPFDAPAPGESMQQPATVISLRRDLGQAYWQAMTLAGRYAYAGRDFVVQQVLDILGAQ
VTEEVHNHHNYAWKEKVNGEELIVVRKGATPAWPGQRGFVGGSMGDISVVVEGVESEESR
LGLHSTIHGAGRVMSRIQAAGKRRWVKRNGRRVQEVVKPGKITREMMLEWLRREGVELRG
GGTDESPHVYRRLPEVLKHHANTIKIVHTLKPMGVAMAGEDVFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagatcatcgatggcattccggtctggggcgaacacgacgaagccaccattgag
cagattcgccgctgcgcccgcgatcccgaagcggtcaaggcggcgctgatggcggatggg
catgtcggctacagtatgccgattggcggcgttgtcgcctaccgcgacgccgtcagtccc
agcggcgtcgggtacgacatttcctgcggcatcaaaggggtccgcaccaacctgcgcgcc
gatgacattcgcaaagatatcggcaagattatggaccaggtggcgcgcgaagtagtcttc
ggcgttggcagtaccagcggcaaagctgccaatcatccgttattcgacgacccgacctgg
cgcgatattccagaggtcggcaaactgcgccagatggcgcgtgagcagctcggcaccgtc
ggttcaggaaatcactgggtcgatattctcgaagacgaggaaggatgggtgtgggttgcg
gcgcactttggcagccggggtctcgggcatcgcattgcgagtggcttcctcaacctggca
cacggacgaccgttcgatgctccggcgccgggtgagtcgatgcagcagccggcgacggtc
atctcgctgcggcgcgacctgggacaggcgtactggcaggccatgacgctcgccggacgc
tatgcgtatgccgggcgcgacttcgtggtgcagcaggtgctcgacatcctgggcgctcag
gtgaccgaagaggttcacaaccaccacaactacgcctggaaagaaaaggtcaacggtgag
gaactgatcgtcgtgcgcaaaggcgctacacctgcctggcccggtcagcgtggctttgtc
ggcggttcgatgggagacatcagcgtggtggttgaaggagtggagagcgaggagtcgcgg
cttggactgcacagcactatccacggcgccgggcgcgtcatgagtcgcatacaggcggct
ggcaagcggcgctgggtgaagcgcaacggtcggcgggtgcaggaagtcgtcaagccgggc
aagatcacccgtgaaatgatgctcgaatggctgcgccgcgagggagtcgaactgcgcggc
ggcggcacggatgagagtccgcacgtttaccgccgcttgccggaggtgctgaagcatcat
gccaacacgatcaagatcgtccacacgctcaagccgatgggtgtggcgatggcaggagaa
gatgtgttcgatccgtacaaggattag
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