Roseiflexus castenholzii: Rcas_0877
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Entry
Rcas_0877 CDS
T00585
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03030
DNA replication
rca03410
Base excision repair
rca03420
Nucleotide excision repair
rca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rcas_0877
03410 Base excision repair
Rcas_0877
03420 Nucleotide excision repair
Rcas_0877
03430 Mismatch repair
Rcas_0877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rca03032
]
Rcas_0877
03400 DNA repair and recombination proteins [BR:
rca03400
]
Rcas_0877
Enzymes [BR:
rca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rcas_0877
DNA replication proteins [BR:
rca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rcas_0877
DNA repair and recombination proteins [BR:
rca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rcas_0877
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rcas_0877
MMR (mismatch excision repair)
DNA ligase
Rcas_0877
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rcas_0877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
zf-NADH-PPase
UPF0758_N
HHH_8
Auto_anti-p27
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
ABU56993
UniProt:
A7NHP6
LinkDB
All DBs
Position
1145341..1147497
Genome browser
AA seq
718 aa
AA seq
DB search
MTSNDPVRRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELVTPDSP
TQRVGAPPSEQFAKVQHVVPMLSLANAFDEAGMRAWYDRTLRLLGSDAQVAFVVEPKIDG
LAVTLIYRNGVLVRGATRGDGEIGEDVTANLRTISSIPLRLGSFANDDSAPTNPTAVPPL
LEVRGEVYMRIADFMRLNEQLAVAGEKVAANPRNAAAGSLRQKDPAVTSRRPLRFFAYGV
GQVEGVALQTQWETLHFLRALGFPVNRDARRFERFEEALAYCREWMTRRDELEYEVDGVV
VKIDSFAQQAELGVVGRDPRWAIAFKFPAREAVSRLLDIVVNVGRTGVITPNAVIEPVNI
GGVTVRNASLHNADYIAERDIRIGDYVIVKRAGDVIPHIVGPVVARRDGSERVWQMPATC
PACGTPLERAEGEVAYRCPNFGICPAQITRRIEHFVSRSAMDIAGIGEKQVQLFVERGWV
QDVADLYTLTPEHFHGIEGYGPKRIANLLNAIAESKDRPLHRLIVGLGIRYVGEVVAQIL
ADHFGSLDALAAASADEIDDLEGIGPAIAASVAEYFARPESKALIAKLKRVGVRTEAKGP
AVAPKGDALAGKTFVITGTLPSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSEPGGTK
VAKAQELGIPTLDEAGLLALIGANDRSAPAASNNNQNAASATSRGTMAEVQQLGLNLE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacttccaacgatcctgtgcgtcgcgctgagacgctgcgcgaacagatccgctatcat
aattaccgctactatgttctcgacgagccggtgattagcgacgccgagtacgatgcgctc
atgcgcgagttgcgcgagctggaagcggcgcatcccgaactcgttacccccgactcgccg
acgcagcgggttggcgcgccgccttctgaacagttcgccaaagttcagcacgtcgtgccg
atgctgtcgctcgctaacgctttcgatgaggcgggcatgcgcgcctggtacgaccgcacc
ctgcgcttgctcggcagcgatgcgcaggtggcgttcgtcgtcgagccgaagattgatggt
ctggcagtgaccctcatctaccgcaacggcgttctggtgcgcggtgcgacgcgcggcgat
ggtgagatcggcgaggacgtgacggcgaacctgcgcactatttccagcattccgctccgc
cttggttcgttcgccaacgacgatagcgcgccaaccaacccgactgccgttccgccgttg
ctcgaagtgcgcggtgaggtttatatgcgcattgccgatttcatgcgcctgaacgaacaa
ctggctgtggctggcgagaaggtcgccgcgaacccgcgcaacgccgccgccggttcattg
cgccagaaagaccctgcggtcacttcccgccgtccgttgcgctttttcgcctatggcgtc
gggcaggtcgaaggggtggcgttgcagacacagtgggagacgctgcactttctccgcgcg
ctcggttttccggtcaaccgtgatgcgcggcgcttcgaacgcttcgaggaggcgctggcg
tactgccgcgagtggatgactcgccgcgatgaactggagtacgaggttgacggcgtggtg
gtcaagatcgatagttttgcgcaacaggcggaactcggcgttgtcgggcgcgacccgcgt
tgggcgattgcctttaagttccccgcgcgcgaggccgtctcgcggctactcgatattgtg
gtgaatgtcgggcgcaccggcgtgattacgcccaacgctgtgatcgagccggtcaatatt
ggtggcgttacggtgcgtaacgccagtctgcacaacgctgattatatcgccgaacgcgac
attcgcatcggggactatgtgatcgttaagcgtgccggggatgtcattccgcacattgtt
ggtccagtcgtggcgcggcgcgatggcagcgagcgcgtctggcagatgccggccacctgc
ccggcatgcggcacaccgctggaacgcgccgagggcgaagtcgcgtaccgctgcccgaac
tttggcatctgcccggcgcaaattacccggcggatcgaacactttgtgtcgcgcagcgcg
atggacatcgcgggaatcggcgagaaacaggtgcaactgttcgtcgaacgcgggtgggtg
caggatgttgccgatctgtacacgctgacgccggagcattttcatgggatcgaggggtat
ggtcctaagcggatcgccaacctgctgaacgctattgccgagtcgaaggatcgcccgctc
caccggctgattgtcgggcttggcattcgctatgtcggtgaggtcgtcgcgcaaatcctc
gccgatcatttcggttcgctcgatgcgctggcagccgcctctgccgatgagatcgacgat
ctcgaaggcattggacccgcgattgccgccagtgtcgccgagtatttcgcacgtccggag
agcaaggcgctgatcgccaaattgaagcgcgtcggcgtgcgcaccgaggcgaaaggtcct
gccgttgcgccaaagggtgatgcgctagcaggtaagacgttcgtcatcaccggaacgctt
ccgtcgatgtcgcgcgaagaagccggcgccctgattgtggcgcatggcggcagggtgagc
ggcagtgtctccaaaaagactgattatctggtggttgggagtgaaccgggaggaacaaag
gttgcgaaagcgcaggaattgggcataccgacgctcgatgaggctggtttgctggcgttg
atcggcgcaaacgaccgcagcgctcctgcagcttccaataataaccagaacgcagcgtct
gcgacatcccgtggtacaatggcagaggttcaacagctggggttgaatctcgagtaa
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