Roseiflexus castenholzii: Rcas_2042
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Entry
Rcas_2042 CDS
T00585
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
rca
Roseiflexus castenholzii
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rca03000
]
Rcas_2042
Transcription factors [BR:
rca03000
]
Prokaryotic type
Helix-turn-helix
Other families
Rcas_2042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
PAS
PAS_8
AAA_16
AAA_2
Mg_chelatase
PAS_4
PAS_9
AAA_5
AAA_22
Xre-like-HTH
Bac_DnaA
AAA
AAA_7
MCM
NB-ARC
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABU58130
UniProt:
A7NKW0
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All DBs
Position
2616865..2618889
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AA seq
674 aa
AA seq
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MQPTCGPVDGDLLSAIWQRFVDTGVLDPALDPIIAMSWQRCILRCNPYTVADLPGISEAE
LADRRAKLADLIALARPIMEDIYQFVEGSGMIIVLLDASACVLDVLGDANVQRQAASLGL
RPGAYWNEGCAGTNAFGLALYERCPVHVIGAEHFFQRFHGLSVSAAPIYHWEGRPIGVLG
MACLTSAGNGATLATVHAAARAIEHQLHAEKLFNELNTQRTLLSAIVEAISDGFIVCDQA
GLVVHINLCAAQILGVKREAAVGRALGASVELPPVVAEAMRQCVMLTDAEVSFQVQKVQI
RCLISLIPIQWQLDRVNNVEGFILTLRRLEQVHRMVQRMVGARSNFTFASIIGSSHAINQ
ARRQAQAAARSSVPVLIVGESGTGKGVLARVIHNESARAEGPFVTVNCRVLPRDLIVGEF
LGYEIGAFHSNRLQGQPGKFELAHGGTLHLEEIEALPLDMQTALLRVVETGEVVRLGGHR
VICVNVRLIVTTSLNLERLVLRGDFRADLYYAVSRMTIRLAPLRERTADLPLLVRDILER
MHRQTGRAVSISYDAQQLMRCYSWPGNVRELENVLERAASLADNGMIDVWHLPDAIRGRP
SETEPGYDQHVPALHEAEYEAIVRAARACQGNATRMAQMLGIGRTTLWRKLKAANVSLDD
FKPSLLAKRSSRRS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaacctgcggtccggtcgatggcgaccttctctcggcaatctggcaacggttc
gttgatacaggcgtgctcgatcctgcactcgatccgatcatcgccatgtcctggcaacga
tgcatcctgcgttgcaacccgtatactgtcgccgatcttcccggcatctccgaagcggag
ctggcagatcgtcgcgccaaactggcggatctcatcgcgctggcgcgccctatcatggaa
gacatctatcagtttgtcgaaggttccggcatgatcatcgtcctgctcgatgcgtcagcc
tgcgttctggacgtgcttggcgacgccaatgtccagcgccaggcggcgtcgctgggatta
cgccccggcgcgtactggaatgaaggatgcgccggaacaaatgcctttgggctggcgctg
tatgaacgatgtcctgtccacgtgatcggcgcagaacacttctttcaacgcttccatggg
ttgagcgtctcagcggcgcctatttaccattgggaaggacgccccatcggcgttttgggg
atggcgtgtctaacctccgccggcaatggtgcgacgctagcgacggttcacgccgcagcg
cgggcaatcgaacatcaactccacgcggaaaaactcttcaatgagttgaacacccagcgc
accctgttgagcgccattgtagaggcgatatcggatgggtttatcgtctgtgatcaggcg
ggtctggtcgtgcatataaacctgtgcgcagcgcagattctgggggtcaagcgcgaggcg
gctgtcggtcgtgcattgggcgcctcggtggagttgccgccggtggttgcggaggcgatg
cgtcaatgtgtaatgctgaccgacgctgaggttagttttcaggttcagaaggtgcagatc
aggtgcctgatcagtcttatcccgatccaatggcaactcgaccgggtgaacaatgtcgaa
gggttcattctgaccttgcgacgcctggaacaggtgcatcggatggtgcagcgcatggtt
ggagcgcgctcgaattttaccttcgccagcattatcggctcatcgcatgcgatcaatcag
gcgcgccggcaggcgcaggcggctgcccgcagcagcgtgccggtgctgatcgttggggaa
agtggcaccggcaaaggagtgctggcgcgcgtgatccataatgaaagtgcgcgggcggaa
ggtcccttcgtaacggtcaattgccgggttttgccgcgcgacctgattgtgggcgagttt
ctgggatatgaaatcggcgcatttcacagcaataggctgcaagggcaaccgggcaagttt
gaactggcgcacggcggcacgctccacctggaagagatcgaagcgctgccgctcgatatg
cagacggcgctgctgcgcgtcgttgagaccggcgaggtggtgcgtctgggaggtcatcgc
gtgatctgcgtcaatgtgcgcttgattgtgaccacttctctcaatttggaacgattggtg
ctgcgtggagattttcgcgccgatctctactatgctgtcagccgcatgacgatccggctg
gcgccgttgcgtgaacgcacagcggatctcccgctcctcgttcgtgatattctggaacgg
atgcaccgccaaaccggcagagccgtcagtatctcgtatgatgcccagcaattgatgcgc
tgctattcctggcccggcaatgtgcgcgaattggaaaacgtgctcgaacgcgcggcgagc
ctggcggataacggcatgatcgatgtctggcatctcccggacgcgatccgcggtcgtccg
tcagaaaccgagccagggtatgatcaacacgtgccggcgctgcacgaggcggaatatgaa
gccattgtgcgcgccgctcgcgcctgtcagggaaatgccacccgcatggcgcagatgctg
ggcattggtcggaccaccctgtggcggaaactgaaagccgccaatgtctccctcgatgat
tttaagccgtctctccttgcgaaacgttcctctcgtcgctcataa
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