Ruminococcus champanellensis: RUM_16740
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Entry
RUM_16740 CDS
T02600
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rch
Ruminococcus champanellensis
Pathway
rch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RUM_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rch03019
]
RUM_16740
03016 Transfer RNA biogenesis [BR:
rch03016
]
RUM_16740
Enzymes [BR:
rch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RUM_16740
Messenger RNA biogenesis [BR:
rch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RUM_16740
Transfer RNA biogenesis [BR:
rch03016
]
Prokaryotic type
tRNA degradation factors
RUM_16740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH_2
SPATA25
Motif
Other DBs
NCBI-ProteinID:
CBL17752
UniProt:
D4LDQ7
LinkDB
All DBs
Position
1826676..1828796
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AA seq
706 aa
AA seq
DB search
MFENYKVFKTMFAGRELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPL
SVDYEERLYAVGKIPGSFMKREGKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLA
VDPDHSPEIMGMIATSIAISISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRNDLNLTV
AGTDKKIVMIEAGANQVDEATMMQAILAGQAENEKMVAFIKDIQKQIGKPKFTFESMEVD
HDLFDAIDAFASDRVKFALDTNDKNIREERLNPIKNDIHEKFDPDYPEQIAMIDECIYKL
QKKIVRNWLYEGKRVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGPVSD
AQRIDGIDEDVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALEPVIPPVEEF
PYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPDSDEFMTMV
DIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIEEALEKTRKARIYILDEIML
KAIPHYRSSVNEFAPKMMQTKIPVDKIREVIGQGGKVIQKISAECEVKIDVNEDGSVFIS
GVDLEKTKKALQIVETIAHDPEVGAIYKGKVVRLMSFGAFVEIAPGKDGLVHISKLDKDR
VEKVEDVVSIGDEIVVKVVEIDKQGRINLSRKDALADIEAKKNAAK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaattataaagtgttcaagaccatgtttgccggcagggaactgaccgttgag
accgggaagacctgtgaactggcgaacggctcctgctgggttcgctacggcggcagcgtt
gtgatggcgaatgttacagcaagcgcaaagcccagagagggcatcgactttttcccgctt
tccgtggattatgaggagcggctgtatgcagttggtaagatcccgggcagcttcatgaag
cgtgagggtaagcccagcgagaaggctattctgacttcccgtatggtggatcgtcccatt
cgtcccctgttccccaaggatatgcgcaacgatgtatccgttgtcatgaccgtgctggct
gtggatccggatcactctccggagattatgggtatgatcgcaacctccattgccatttct
atttccgatattccgtggaacggccccattgccggcgtcagtgttggtctggtagatggt
gaaatcgtactgaatccgactctggagcagagaggcaggaatgatctgaatctgacggtt
gcaggcacggacaagaagatcgttatgatcgaggcaggcgcaaaccaggtggatgaagcc
accatgatgcaggcgattctggctggtcaggctgaaaacgaaaagatggttgcctttatc
aaggacatccagaagcagatcggcaagcccaagtttacctttgaatccatggaagtggat
catgatctgtttgatgccattgacgcatttgcgtccgaccgggtgaagtttgctctggat
accaatgataagaacatccgtgaagaacggctgaatcccatcaaaaacgacattcacgaa
aagtttgatccggattacccggagcagatcgctatgatcgatgagtgcatctacaagctg
cagaagaagatcgtccgcaactggctctatgagggcaagcgtgtggatggcagaggcatt
gatgagatccgtcctctggcggcagaggttggagtgctgccccgtgtgcatggttccggt
ctgttcacaagaggtcagacccaggttctgactgttgcaacccttggtcctgtttccgat
gcacagcggatcgacggcatcgatgaagatgtgtccaagcgttacatgcatcactataat
tttccctcctattccgttggggaaaccaagcccagccgtggcccgggcagacgtgagatt
ggtcacggtgctctggcagagcgtgcgctggagccggtgattccgccggtagaggagttc
ccctatgcactgcgtctggtttccgaggtgctgtcctccaacggttccacctcccagggc
tcaatctgcggctctacgctggcgctgatggatgcaggcgtacccatcaaggcaccggtt
gccggtatttcctgcggtctgatcaccaagccggacagcgatgaattcatgaccatggtg
gatatccagggtctggaggatttcttcggggatatggactttaaggttggcggtacccat
aagggtatcactgccatccaggtggatatcaaggtggatggtctgacccctgccattatt
gaagaggcgctggaaaagaccagaaaggctcggatctacattctggacgagattatgctc
aaggcaattccccattaccgcagctctgtcaatgagtttgcacccaagatgatgcagacc
aagattccggttgacaagattcgtgaggtcatcggtcagggcggcaaggtgatccagaag
atctccgccgagtgcgaggtcaagatcgacgtaaacgaggacggcagcgtattcatcagc
ggtgtggatctggaaaagaccaagaaggcactgcagatcgtggagaccattgcacacgat
ccggaggttggcgccatctataagggcaaggtggttcggctcatgtcctttggcgcattc
gtggaaatcgcacccggcaaggatggcttggttcatatttccaagttggataaggatcgg
gtagaaaaagtggaagatgtggtttccatcggggacgagatcgtggtaaaggtcgttgag
atcgacaagcagggcagaatcaacctgtcccgcaaggatgcgctggctgacatcgaggca
aagaagaacgctgcgaaataa
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