KEGG   Ruminococcus champanellensis: RUM_16740
Entry
RUM_16740         CDS       T02600                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
rch  Ruminococcus champanellensis
Pathway
rch03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rch00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RUM_16740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rch03019]
    RUM_16740
   03016 Transfer RNA biogenesis [BR:rch03016]
    RUM_16740
Enzymes [BR:rch01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RUM_16740
Messenger RNA biogenesis [BR:rch03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RUM_16740
Transfer RNA biogenesis [BR:rch03016]
 Prokaryotic type
  tRNA degradation factors
   RUM_16740
SSDB
Motif
Pfam: RNase_PH S1 RNase_PH_C PNPase KH_1 KH_2 SPATA25
Other DBs
NCBI-ProteinID: CBL17752
UniProt: D4LDQ7
LinkDB
Position
1826676..1828796
AA seq 706 aa
MFENYKVFKTMFAGRELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPL
SVDYEERLYAVGKIPGSFMKREGKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLA
VDPDHSPEIMGMIATSIAISISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRNDLNLTV
AGTDKKIVMIEAGANQVDEATMMQAILAGQAENEKMVAFIKDIQKQIGKPKFTFESMEVD
HDLFDAIDAFASDRVKFALDTNDKNIREERLNPIKNDIHEKFDPDYPEQIAMIDECIYKL
QKKIVRNWLYEGKRVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGPVSD
AQRIDGIDEDVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALEPVIPPVEEF
PYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPDSDEFMTMV
DIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIEEALEKTRKARIYILDEIML
KAIPHYRSSVNEFAPKMMQTKIPVDKIREVIGQGGKVIQKISAECEVKIDVNEDGSVFIS
GVDLEKTKKALQIVETIAHDPEVGAIYKGKVVRLMSFGAFVEIAPGKDGLVHISKLDKDR
VEKVEDVVSIGDEIVVKVVEIDKQGRINLSRKDALADIEAKKNAAK
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgttcgaaaattataaagtgttcaagaccatgtttgccggcagggaactgaccgttgag
accgggaagacctgtgaactggcgaacggctcctgctgggttcgctacggcggcagcgtt
gtgatggcgaatgttacagcaagcgcaaagcccagagagggcatcgactttttcccgctt
tccgtggattatgaggagcggctgtatgcagttggtaagatcccgggcagcttcatgaag
cgtgagggtaagcccagcgagaaggctattctgacttcccgtatggtggatcgtcccatt
cgtcccctgttccccaaggatatgcgcaacgatgtatccgttgtcatgaccgtgctggct
gtggatccggatcactctccggagattatgggtatgatcgcaacctccattgccatttct
atttccgatattccgtggaacggccccattgccggcgtcagtgttggtctggtagatggt
gaaatcgtactgaatccgactctggagcagagaggcaggaatgatctgaatctgacggtt
gcaggcacggacaagaagatcgttatgatcgaggcaggcgcaaaccaggtggatgaagcc
accatgatgcaggcgattctggctggtcaggctgaaaacgaaaagatggttgcctttatc
aaggacatccagaagcagatcggcaagcccaagtttacctttgaatccatggaagtggat
catgatctgtttgatgccattgacgcatttgcgtccgaccgggtgaagtttgctctggat
accaatgataagaacatccgtgaagaacggctgaatcccatcaaaaacgacattcacgaa
aagtttgatccggattacccggagcagatcgctatgatcgatgagtgcatctacaagctg
cagaagaagatcgtccgcaactggctctatgagggcaagcgtgtggatggcagaggcatt
gatgagatccgtcctctggcggcagaggttggagtgctgccccgtgtgcatggttccggt
ctgttcacaagaggtcagacccaggttctgactgttgcaacccttggtcctgtttccgat
gcacagcggatcgacggcatcgatgaagatgtgtccaagcgttacatgcatcactataat
tttccctcctattccgttggggaaaccaagcccagccgtggcccgggcagacgtgagatt
ggtcacggtgctctggcagagcgtgcgctggagccggtgattccgccggtagaggagttc
ccctatgcactgcgtctggtttccgaggtgctgtcctccaacggttccacctcccagggc
tcaatctgcggctctacgctggcgctgatggatgcaggcgtacccatcaaggcaccggtt
gccggtatttcctgcggtctgatcaccaagccggacagcgatgaattcatgaccatggtg
gatatccagggtctggaggatttcttcggggatatggactttaaggttggcggtacccat
aagggtatcactgccatccaggtggatatcaaggtggatggtctgacccctgccattatt
gaagaggcgctggaaaagaccagaaaggctcggatctacattctggacgagattatgctc
aaggcaattccccattaccgcagctctgtcaatgagtttgcacccaagatgatgcagacc
aagattccggttgacaagattcgtgaggtcatcggtcagggcggcaaggtgatccagaag
atctccgccgagtgcgaggtcaagatcgacgtaaacgaggacggcagcgtattcatcagc
ggtgtggatctggaaaagaccaagaaggcactgcagatcgtggagaccattgcacacgat
ccggaggttggcgccatctataagggcaaggtggttcggctcatgtcctttggcgcattc
gtggaaatcgcacccggcaaggatggcttggttcatatttccaagttggataaggatcgg
gtagaaaaagtggaagatgtggtttccatcggggacgagatcgtggtaaaggtcgttgag
atcgacaagcagggcagaatcaacctgtcccgcaaggatgcgctggctgacatcgaggca
aagaagaacgctgcgaaataa

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