Rosa chinensis (China rose): 112166787
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Entry
112166787 CDS
T06020
Name
(RefSeq) terminal nucleotidyltransferase 4B
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112166787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112166787
03016 Transfer RNA biogenesis [BR:
rcn03016
]
112166787
Enzymes [BR:
rcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
112166787
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112166787
Transfer RNA biogenesis [BR:
rcn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112166787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
PAP_NTPase
TUTase
Polbeta
Nrap_D2
DNA_pol_B_palm
Motif
Other DBs
NCBI-GeneID:
112166787
NCBI-ProteinID:
XP_024159458
LinkDB
All DBs
Position
5:complement(27891229..27895759)
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AA seq
532 aa
AA seq
DB search
MEQAPETPQRILYETLCPLSLSTPDQSPPPSDHLEPYFVFRNEISISSLRSTSADTAAPN
FISLDVAADEAEPKSAWESPAAEPKTPVPEPKLESGWFRGRSKFKSPMLQLHKEILDFCE
FLSPTPQEEEARRTAVERVSEVIKYIWPRCGVEVFGSFKTGLYLPASDIDVVIMRSGIPT
PQQGLYALSRALSQMGLAKRIQVIAKARVPIIKFEEKTSGIAFDISFDIDSGPKAAEFIK
DAISKWPPLRPLCLILKIFLQQRELNEVYSGGLGSYALLAMLIAMLQSLRESQASPEQNL
GVLLVNFFDFYGRKLNTSDVGVSCKGTGTFFSKNSKGFTNKGRPFLIAIEDPQAPENDVG
KNSFNYFQIKSAFAMAYTTLTNPKNIMSLGPNRSILGTIIRPDATLAERKGGPGQVTLDS
LLPGAGEPLRPESEQQEFLCNWQYDDDDPLPRGGDFVGDVNGESSSGKKRKSPFKDKSKS
SGKKGKKIKAEENDSRKKEKASMKKERRQKRKQSRESLNGYGAYVGGSPWSR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggctcctgagaccccccaaaggattctctacgaaaccctatgccctctctct
ctttccaccccggaccaatctccgccgccgtccgatcacctggaaccctacttcgttttc
cgcaacgagatctctatctcctctctccgctccacttcggcggacaccgccgcgcccaac
ttcatctcccttgacgttgccgccgatgaagccgagccgaaatcggcctgggaatctccg
gcagccgagccaaagactccggttccggagccgaagctcgagagcggatggtttcgcggc
cgcagtaaattcaagagccctatgcttcagctccataaagagattctggacttttgtgag
tttctctctccgactccacaggaggaagaggcacggaggacagcagtagaacgtgtttct
gaggttatcaaatatatatggcctcgatgcggggttgaagtttttgggtcattcaagacg
gggctgtatcttcctgctagtgatattgatgtcgtcattatgcggtctggtattccaacc
ccacaacaagggttgtatgcactttctagggcattgtcacaaatgggattggcaaaaagg
atacaggtgattgccaaggctcgtgtacctattattaaatttgaagaaaaaacaagtggt
atcgcctttgacataagttttgatatagacagtggaccaaaagctgctgaatttatcaag
gatgcaatatctaagtggcctcctttgcggccgttgtgtttaattttgaaaatattttta
caacagagagaattgaatgaggtatactctggtggattaggttcttatgccctccttgca
atgctaattgcaatgctgcagagcctcagggaaagccaagcttctccagagcaaaatttg
ggagttcttttggtaaacttctttgatttttacgggcgcaaactgaacacttcagatgtt
ggtgtgtcttgcaaagggacaggcacttttttctcaaagaatagcaaagggttcacaaat
aaaggacggccatttcttattgcaatcgaggacccacaggcaccagagaatgatgttggg
aagaactcttttaactattttcagattaaatcagcatttgcaatggcttatactacattg
acaaatcctaagaacattatgtccctgggcccaaataggagcattcttggtaccataatt
agaccggatgcaacattggcggaacgaaaaggagggcctggtcaggtgactttagatagc
ttgcttccaggagcaggggagccacttcggccagagtctgagcagcaagaatttttatgc
aattggcagtatgatgacgacgatcccctgccacggggaggtgactttgttggagatgtg
aacggggaatcatcatctggaaagaagaggaaatctccgtttaaagataagtctaaatca
tcaggtaaaaagggaaaaaagataaaggctgaagaaaatgactcgagaaaaaaagagaag
gcatccatgaagaaggaacggagacaaaaacggaaacaatcccgggagagtctcaatgga
tatggtgcttatgttggagggtctccttggagtcgctag
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