Rosa chinensis (China rose): 112170541
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Entry
112170541 CDS
T06020
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112170541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112170541
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112170541
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112170541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112170541
NCBI-ProteinID:
XP_024163637
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All DBs
Position
6:complement(45905696..45908922)
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AA seq
613 aa
AA seq
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MATLIRRRLLCTSAKAGKKWAVKEVTKANFSEAVEEFKDDLARSDFVAVSLQKTGSFSAG
WHRALPFDTNDTAYLKAKYAAERFQVLQFAACPFSLRATKLTAHPYNFILFPRDELKVGM
PSYSFSVQTSHLTYMAQEGFDFNACIYDGISYLSKAQESAAKVRIGNPTPGNYVVDSSLT
HTVADTIFIERIKSRVKHWKNACKKSGSRTDDALLSSLRKLVMGTEIYGSRPCMNIDVCS
ERQVQLALEMLKEFSDELVPLIIPANGGGTQSVRVVLTSSKEDKDLFERELQNVVEEQNK
RVRGFREVIDLISASQKPVVSHNSLNDFTFIHSKFLSPLPANVDEFTGSLSLVFPHILDI
NHLMKNIGPLRKVTNIPAAISYLNNHYFAPIDLETLPQENEGKIHRHNVVKMCYLFAKLC
TILKIPENAKLSNNHLLAPALDEYTNISNPFSDIPQESINEDIRIWRNNMRKISCDNLVF
LWGFRSGLTAGMLKSMLHKSHDVFSEDFDVRFVDKSCAIAVFWQPGLSGTFLDVVSNEAI
IGGSLREMVSEGLRATSYRTYKRVCKLGLWEADLAESLDKALEDPDYSMDADSTTNGREI
LWSTDSMINFDDL
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgactctgatacggcggcgtttgctctgcacgagcgccaaggcggggaagaaatgg
gcggtgaaggaggtgacgaaggcgaatttttcggaggcggtggaggagttcaaggacgac
ctggctaggtcggactttgtggccgtgtcgctgcagaaaacggggtcgttttctgcgggc
tggcaccgggcgctgccgttcgatacgaacgacacggcgtatttgaaggcgaagtacgcg
gcggagcgtttccaggtgcttcagttcgctgcctgccctttcagtcttagagccaccaag
ctcaccgctcacccatataactttatattgttccctagagatgagctgaaggtggggatg
ccgtcttatagtttttcggttcaaacgtcacatttgacatacatggctcaagaaggtttt
gattttaatgcctgcatatatgatggtatatcgtacttgtctaaagcacaagaatctgca
gctaaagtgcggatagggaatccgacacccgggaactatgtagtagattcttccttgacg
catactgttgctgatacgatttttattgagagaattaaatcacgagttaagcattggaaa
aatgcgtgcaagaaatcaggctcaaggacagatgatgctctgctgagttccttgagaaaa
cttgtgatggggactgaaatttatggatcgagaccatgcatgaatatagatgtttgcagc
gagcgtcaagtacagcttgcactggagatgctaaaagagttcagtgatgaacttgttcct
ttaataatcccagcaaatggtggaggtactcagtctgttcgagttgttttgacaagttct
aaagaggacaaggacttgtttgagagagagcttcaaaacgttgtggaggaacaaaacaag
agggttcgtggatttcgagaggtgatcgatttgatttctgcttcacagaaacctgttgtc
tcccacaattcccttaatgatttcacgtttattcattcaaaatttctctctcccctgccg
gctaacgtagatgagttcacaggctctttgagcttggtttttccccacatacttgacatc
aaccatctgatgaagaatattggccctttaaggaaggtgaccaatatacctgcagctatt
tcctacctgaataatcattactttgcacctattgatttggagactttacctcaagaaaat
gaaggcaaaattcataggcataatgtcgtgaagatgtgttatttgtttgcgaagctctgc
accattctgaaaattccggagaatgctaagctatctaacaatcacctattagctccagcc
cttgacgagtacactaacatatccaatcccttctccgacattccccaggaatcaatcaat
gaggatatcagaatctggagaaataatatgagaaaaatcagctgtgataatttggtattc
ttatggggatttagaagtgggttgaccgctggaatgctgaagagcatgttgcacaagtca
catgatgttttctctgaagactttgatgttcggttcgtagataagagttgtgccattgct
gttttctggcaacctggtttatctggaactttccttgacgttgtgagtaacgaagccatc
atcggtggatccttgagggagatggtctcagagggcctaagagcaacgagttatagaact
tacaagagagtctgtaagttgggcttatgggaggcagatttagcagagtccttggacaaa
gctttagaagatccagactacagtatggatgctgattcaacaacaaacggcagagaaatt
ctttggtctactgactctatgattaattttgatgacctctaa
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