Rosa chinensis (China rose): 112187222
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Entry
112187222 CDS
T06020
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03030
DNA replication
rcn03410
Base excision repair
rcn03420
Nucleotide excision repair
rcn03430
Mismatch repair
rcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112187222
03410 Base excision repair
112187222
03420 Nucleotide excision repair
112187222
03430 Mismatch repair
112187222
03440 Homologous recombination
112187222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcn03032
]
112187222
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112187222
Enzymes [BR:
rcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112187222
DNA replication proteins [BR:
rcn03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
112187222
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
112187222
MMR (mismatch excision repair)
DNA polymerase delta complex
112187222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
112187222
NCBI-ProteinID:
XP_024181686
LinkDB
All DBs
Position
2:34969174..34988906
Genome browser
AA seq
1090 aa
AA seq
DB search
MSNNGKTRKRPAPPQKPSPVNPPPPKQRAASQEEEEFLDEDVFLDETLLETEDDLILRDS
EQRQSLASRLTRWARPPLSDAYKSASKSILFQQLEIDYVIGESNRELLPNWSGPAAIIRI
FGVTKEGHSVCCHVHGFEPYFYINCPPGMGHDDIPRFRQTLEAKMGESNRNNKASMFIRR
VEMVYKRNIMYYQQQDSNPFLKIVVSLPTMVARCRGILDKGIQIDGVGEKSFMTYESNVL
FALRFMIDCNIVGGNWIEVPAGKYKTAKSTSYCQLEFNCLYSDVISHAPEGEFSKMAPFR
ILSFDIECAGRKGHFPDAKHDPVIQVANLVTLQGENQPFIRNVMTLKSCSPIAGADVISF
DTEREVLLAWRDLIREADPDVIIGYNICKFDLPYLIERAETLGIPEFPILGRIRNSRVRV
KDTTFSSRQMGTRESKEVTIEGRVQFDILQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHH
SIISDLQNGNAETRRRLAEYCLKDAYLPQRILDKLMFIYNYVEMARVTGVPISFLLSRGQ
SIKVLSQLLRKAKQKNLLLPNVKQAGSEQGTYEGATVLEAKAGFYEKPIATLDFASLYPS
IMMAYNLCYCTLVRSEDVRKLSLPPECVNKTPSGETFVKPNLQKGILPEILEELIAARKR
AKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIE
HTKNLVKEKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEAAMKLGREAADAISATFTKP
IKLEFEKVYYPYLLISKKRYAGLFWTNPEKFDKMDTKGIETVRRDNCLLVKNLVNECLHK
ILIDRDIPGAVQFVKNTISDLLMNRMDLSLLVITKGLSKTGEDYGVKAAHVELAERMRKR
DAATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIF
EPILKNASSELLHGSHTRSISMPTPSNSGIMRFAKKQLTCLGCKTPISNSDRTLCSHCKG
REAELYCKTVAHVSELETLFARLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMGE
AKVQLDRWNF
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaatggcaaaacccgaaaacgcccggcaccgccgcagaagccgtcgccggtg
aacccaccaccgcccaagcagcgcgccgcgtctcaagaagaagaggaatttctcgacgag
gacgtcttcctcgacgaaaccctactcgagaccgaagacgacctcattctccgcgacagt
gagcagcgccaatccctcgcctcccgcctcaccaggtgggcccgcccacctctctccgat
gcctacaagtccgcctccaaaagcatcctgtttcagcaattggagattgactatgtgatt
ggagagagcaatagagaattgttgcctaattggtccggtcctgctgccattatcagaata
tttggggttacaaaggaaggacatagtgtttgctgccacgttcatggattcgagccatat
ttctatatcaactgccctccagggatgggacatgatgatattcctcggtttcgtcagact
ctcgaggcgaagatgggggagtcaaacaggaacaataaggcatcaatgttcattagacgt
gttgaaatggtgtacaagaggaatataatgtattaccagcagcaggattccaatcccttt
ctcaaaattgttgtttctttgccaacaatggtggcccgctgccggggtattcttgataaa
ggcatacaaattgatggtgttggtgagaagagcttcatgacatatgaaagcaatgttctg
tttgctcttcgattcatgattgattgcaacatagttggtggaaattggattgaggtacct
gccggaaaatataagacagcaaagagtacatcgtactgccaattagagttcaattgccta
tattcagacgtgatcagccatgctcctgaaggtgaattttcgaagatggctccgtttcgc
attttaagctttgacattgagtgtgctggacgcaaaggtcattttcctgatgccaagcat
gatcctgtcatccaggtggccaacctagttactttgcagggagagaatcagccatttatt
cgtaatgttatgactcttaagtcatgctcccctatagctggtgctgatgtgatttccttt
gatacagaaagagaagtcttgctggcttggagggacttaatccgtgaggcagacccagat
gtcataattggatataacatctgtaaatttgatttgccatatctcattgagagagctgag
actttgggaatacctgaatttccaatacttgggcgcatcagaaacagcagggttcgggtc
aaagacactactttttcttcaaggcagatgggaaccagggaaagtaaagaagtaacaatt
gaagggagggttcaatttgatatactccaggttatgcaacgggattataaattaagctca
tattcattgaattctgtctcagcacactttctttctgagcagaaagaggacgtccaccat
tccataatatctgatcttcagaatggcaatgcggaaactaggaggcgacttgctgagtat
tgtctgaaggatgcttacctcccacagaggattttggacaaacttatgtttatttacaat
tatgtagagatggctcgagtcactggtgttcccatctcatttctactctccagagggcag
agcatcaaggtgctttctcaacttcttaggaaggctaaacaaaagaaccttctccttcca
aatgtcaaacaggctggatctgaacaaggaacatatgaaggtgccactgttttggaagca
aaggcaggattttatgaaaagccaattgcaactttggattttgcatccctgtacccctca
atcatgatggcttataatctatgctattgcaccctggtccgatctgaagatgtacgcaaa
ctcagccttcctccagaatgtgtgaacaaaactccatctggagaaacatttgttaaaccg
aatttgcaaaagggaattcttcctgaaattcttgaagaactaatagctgctcggaagaga
gcaaaagcggatttgaaggaagcaaaggatccacttgagaaggcagtgctagatggtcga
caattggccttaaagataagtgcaaattccgtatatgggtttaccggagctacaattggt
cagttaccatgtttggagatatcatcaagtgtcacgagctatggtcgacagatgattgag
cacacaaaaaaccttgtaaaagaaaaatttactactcttggaggctatgaacataatgcc
gaggtaatatatggggacacagattcagttatggtgcaattcggtgtaagtactgttgaa
gcagcaatgaaattgggaagagaagctgctgatgctatcagtgccacgttcacaaagcct
atcaaactcgagtttgagaaagtttattatccatatcttctgattagcaagaagagatat
gctggtttgttttggacaaatccagagaagttcgacaaaatggatactaaaggcattgaa
acagtacgaagagacaattgcttattggtaaaaaacctggtaaatgagtgcttgcacaaa
atactgattgacagagatattcctggggcagtccagtttgtcaagaacaccatatctgat
cttcttatgaaccgcatggatttgtcactcttggttatcactaagggtctgtcaaaaact
ggggaggattatggagtaaaggcagctcatgttgaacttgctgagcgtatgcgcaagcga
gatgctgccactgctccaacggttggggatcgagtaccatatgtcattatcaaagctgca
aaaggtgccaaggcttatgagaggtcagaggaccccatctatgtgctcgagaataacatt
cctatagaccctcaatattatcttgaaaaccaaatcagcaagccactcttaagaattttt
gagcctattttgaagaatgccagctcggaacttctccatggaagtcatacaagatctatt
tcaatgcctactccctccaacagtggcataatgagatttgcaaagaaacaactcacttgc
cttggttgtaaaactccaattagcaattcagacagaacgctgtgctcacactgtaaggga
agagaagctgaactttactgcaaaactgtggctcatgtttctgagctggagactcttttt
gcacgtttatggacacagtgccaggagtgccaaggttcacttcatcaagatgtgctctgc
acaagtcgggattgccctatattttacaggagaaagaaggcacaaaaagacatgggtgaa
gctaaagtgcaattagaccggtggaacttctga
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