Rosa chinensis (China rose): 112188237
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Entry
112188237 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03020
RNA polymerase
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112188237
09124 Replication and repair
03420 Nucleotide excision repair
112188237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112188237
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112188237
Enzymes [BR:
rcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112188237
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112188237
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112188237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
112188237
NCBI-ProteinID:
XP_024183087
LinkDB
All DBs
Position
2:complement(10733112..10741253)
Genome browser
AA seq
1842 aa
AA seq
DB search
MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEEEHK
FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQESDEPLKKSRGGCGAQQPKLSIDG
MKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYARPD
WMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEF
AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV
ITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD
GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR
LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL
GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLQ
RTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARK
FLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSLEP
EPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC
VGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL
IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD
SLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQLG
TEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVPGD
DLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPGEM
IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPE
ANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEVNP
DKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIMNE
ETPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKAEQ
EWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDGSY
VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDHLR
GVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTPYR
DGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP
GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYXPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPS
VAYSPSSPRLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYTPGSPYTSGVSPDYSP
SSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKDDKDDRSTR
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgcttccctttctcgccgtgcgaggtcgccaaggtccgccgcgtccagttc
ggcatactgagcccagacgaaatcaggcaaatgtctgtggtgcagattgagcacagtgag
acaatgctggggggaaagccgaagacggcggggttgagtgaccctcggctggggacaatt
gaccggaagatgaagtgtgagacttgcacggccaacatggctgagtgcccgggtcatttt
gggcacctggagctggccaagcccatgtttcatattgggttcatgaagactgtgttgtct
ataatgcgctgcgtctgcttcaactgctccaaaatcctagttgatgaggaggagcacaag
tttaagacagctttgagaatcaagaacccaaaaaataggctaaagaaaattttggacgcg
tgcaaaaacaaaaccaagtgtgaaggcggtgatgagattgatgtgcaagaatcggacgaa
cctttaaagaaaagtcggggtggctgtggtgctcagcagccgaagctctctatagatggt
atgaagatggttgcagagtacaaagcccaaagaaagaagagtgatgaccaggaacagctt
cctgaacctgtggaaaggaagcagacccttaccgctgaaagggttcttagtgtgttgaag
aggataagtgatgaagattgccaattattgggattgaaccccaagtatgcacgtccagat
tggatgattttacaagttcttcctattcctccacaacctgtgagaccctctgtgatgatg
gacacctcctcgaggagtgaggatgatttaacacatcagctggccatgattatccgccac
aacgagaatctgaggagacaggaaagaaacggatcacccgctcatatcatctcagagttt
gcacaactcttgcaattccatatagctacatattttgataatgagttgcctggactacca
agggccacacagagatcagggaggcctataaaatcaatttgtagtaggcttaaggcgaag
gaaggtcggattagaggaaacttaatggggaagagggttgatttctcagcacgtacggtt
attacaccagatccgaacattaacattgatcaattaggagtaccatggagtattgcgctg
aatctcacataccctgaaactgtgactccttataatattgaaaggttgaaggagcttgtt
gagtacgggccccatcctccaccaggtaaaactggtgcaaagtatataataagagatgat
gggcaaaggcttgatctacggtacttgaagaaaagtagtgatcatcatttggagcttggt
tataaggtggagcgtcatttgaatgatggagactttgtcctctttaatcgtcaacccagt
ctccataaaatgtctattatggggcacagaatcaaaatcatgccttactcaacttttcga
ttaaatctatctgtcacttcgccttataatgctgattttgatggggatgaaatgaatatg
cacgttccccagtcatttgaaactagggcagaagtgttggagctcatgatggtgcccaaa
tgcattgtgtcccctcaatcaaatcgtcctgtgatgggaattgtccaagataccctgttg
ggttgtcgtaagatcaccaagagggataccttcatagagaaggatgttttcatgaacatc
ttgatgtggtgggaggattttgatggaaaagtacctgctcctgcaatattgaaaccacgg
cctctttggactgggaaacaggtgtttaatcttataataccaaagcaaataaatctccag
agaacttcagcgtggcactctgaatcagaaactggtaacattacccctggtgatactcac
gtaagaatagaaaaaggggagttactttccggaactctgtgcaaaaaggcacttgggaca
tctactggaagtcttatacacgtcatatgggaagaggttggtccagatgctgcccgcaaa
ttccttggtcatacccagtggcttgtgaattactggctattgcagaatgcatttagcatt
ggaattggagatacaattgctgatgcagcaacgatggaaaagatcaatgaaactatttcc
aaggcaaaaaatgaagtgaaagaacttatcagtaaagcccaatccaagagcctggagcct
gaaccggggcgaactatgatggattcctttgaaaacaaagtgaatcaggtcttaaatagg
gctcgtgatgatgctggaagtagtgctcagaagagtttgtctgagagtaacaatcttaag
gctatggttacagctggctctaagggaagttttatcaacatatcacagatgactgcttgt
gtgggacagcagaatgttgagggtaaacgaatcccatatgggttcatagaccgtactttg
ccccacttcactaaggatgactatggaccagaaagtcgtggctttgtagagaattcatac
cttcgaggactaactccacaggagttcttttttcatgctatgggaggtagggaaggtctt
atagatactgcagttaagacatccgagactgggtatatccagaggagactggtgaaggct
atggaggatattatggtcaagtatgatgggactgtgagaaattcgttgggggacgtcata
cagtttctctatggagaagatggaatggatgctgtatggatagaatcacaaaagctggat
tctcttaaaatgaagaagaaagagtttgacaagactttcgcttatgtgtttgatgatgaa
aattggaatccggactatatgttgcctgaacatgttgaggatctaaagactattagagag
ttccgcaatgtgtttgatgcagaagtttcaaaacttgaaactgataggcttcaacttggc
acagagattgctgtcactggtgataattcttggccattgcctgttaacctgaagaggctc
atttggaatgcacaaaaaacttttaaaatcgacttcaggaggacttctgatatgcatcca
atggaaattgttgaggctattgataaactccaggagaggctaagggttgttcctggtgat
gatttgttgagtgttgaagcccaaaagaatgcaactctctttttcaacattttgcttcgt
agcactttcgctagtaaaagggtgttggaggagtacaggcttactcgtgaagcatttgag
tgggttattggggagatagagtcacgtttcctgcaatcactggtagcgcctggtgaaatg
attggttgtgttgctgcacaatctattggtgaacctgccactcagatgaccctcaatacc
ttccattatgctggtgtgagtgcaaaaaatgttacactaggtgttcccaggttgagggaa
attattaatgttgccaaaaggatcaaaacaccatctctgtctgtctacttaaaacctgaa
gctaataaaaccaaggagagggccaagaatgtgcagtgtgccttggaatacactacccta
cgaagtgttactcaggctacagaagtatggtatgatccagatccaatgagcacattaata
gaagaggatcttgattttgtgagatcttactacgaaatgccagatgaagaggtcaacccc
gacaaaatttctccgtggctgcttcgtattgagttgaatcgcgaaatgatggtggataag
aaattgagcatggctgacattgctgagaagattaaccttgaatttgatggtgatttaact
tgtatttttaatgatgacaatgccgaaaagttgatccttcgaattcgtatcatgaatgag
gaaactcctaaaggggaatcacaagatgaatctgctgaagatgatgtattcctgaagaag
attgaaagtaatatgcttacagaaatggctcttcgaggtatcccagatatcaacaaagtg
ttcataaagcatggtaaagttaacaagtttgatcagaatgaaggattcaaggcagagcaa
gagtggatgttggatacagagggtgttaatcttttagccgtcctgtgccatgatgatgtt
gatgccaggagaacgacaagcaatcatttgattgaaattattgaagttcttgggattgag
gcagttcgccggtctttgctggatgagttgcgagttgtcatatcgtttgatggatcttat
gtgaactaccgccatctggctatcctatgtgataccatgacgtatcgtggccacttgatg
gccattactcgtcatggtataaatagaaatgataccggcccaatgatgcgttgttcgttc
gaagaaactgtggatattctgctggatgcttctgtttttgcagaaacggatcatctgagg
ggtgtaacagaaaacattatgctaggccagttggcaccaattgggactggagactgtgcc
ctgtatctcaatgatgagatgctaaagaatgctattgaactccagctgcctagttatatg
gatggccttgattttggcatgaccccatcgcgttctccagtgtcaggaactccatatcgt
gatggaatgatgtcacctaactatttgctgagcccaaatatgcgaatgtctcccatctca
gatgctcagttttctccctatgtcggtggaatggcattctctcctacttcatctccaggc
tacagcccatcatcccctggctacagtccatcatccccaggttacagccccacgtcccct
ggttatagccccacatccccaggttacagccccacctcccctggttatagtcccacttct
ccaacctatagtccaagctctccaggttatagtccaaccagtccggcatattctcctaca
agtccgtcttactctcctacatctccaagctacagccctacctctccaagctacagtcca
acctctccaagctacagcccgacctctccaagctacagcccgacttcccccgcttacagc
ccgacttcccccgcatacagcccgacttcccccgcttacagccccacttccccatcatac
agcccaacatctccctcatacnagcccacttcgccctcctacagccccacttcgccctcc
tacagccccacatccccctcctacagcccaacatccccctcctacagcccaacttcacct
gcctacagcccaacttctcctggttacagccctacttccccaagttatagtccaacctct
cctagttatagccctacctctccaagttacaatcctccttctgcaaaatatagcccatcg
gtagcttactctccgagcagtccaagattgtcaccagctagcccatatagtcctacctct
ccaaattacagccccacatcaccgtcatattctcccacatcaccatcttattctccctct
agcccctcatacactcccggcagcccatatacctctggagtgagccccgattatagccca
agttctccacagtacagtccaagtgctggatactcacccagtcagccagggtactcccca
tcatctactagccagtacaccccgcaaacgagtgaaaaggatgataaggatgacaggagc
actcgctaa
DBGET
integrated database retrieval system
