Rhodobacter capsulatus: RCAP_rcc01664
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Entry
RCAP_rcc01664 CDS
T01213
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03030
DNA replication
rcp03410
Base excision repair
rcp03420
Nucleotide excision repair
rcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCAP_rcc01664 (ligA)
03410 Base excision repair
RCAP_rcc01664 (ligA)
03420 Nucleotide excision repair
RCAP_rcc01664 (ligA)
03430 Mismatch repair
RCAP_rcc01664 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcp03032
]
RCAP_rcc01664 (ligA)
03400 DNA repair and recombination proteins [BR:
rcp03400
]
RCAP_rcc01664 (ligA)
Enzymes [BR:
rcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RCAP_rcc01664 (ligA)
DNA replication proteins [BR:
rcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RCAP_rcc01664 (ligA)
DNA repair and recombination proteins [BR:
rcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RCAP_rcc01664 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCAP_rcc01664 (ligA)
MMR (mismatch excision repair)
DNA ligase
RCAP_rcc01664 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RCAP_rcc01664 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ADE85409
UniProt:
D5ATX0
LinkDB
All DBs
Position
1801618..1803741
Genome browser
AA seq
707 aa
AA seq
DB search
MMSAAPFSDLDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIE
ARFPDLARADSPTMRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGLGP
ESALPCTAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLTGAPA
VLEVRGEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFFAYS
WGVLSEPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDIDGV
VYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLAPVT
VGGVVVSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLSRRD
PAAQPFVFPHLCPECGSEALREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGA
KQVEAFYKDGWIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLFQAIEEKRKIPLAR
LIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVPGSAEWQELLSIDGVGETLAASVT
AAFHPGAERDAIDRLVTHLTVEPAVPRASDSPVAGLTVVFTGTLERMTRAEAKARAEALG
AKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLIGAT
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgcagcaccgttttccgacctggacagcctgacccgcgccgaggcagaggcc
gaggtgccggagcttgtcgcccggatcgaggcggcgaatcatgcctatcacacccttgat
gcgcccaagatttccgatgctgactatgatgcgctgaaacggcgtctggcggcgatcgag
gcgcggtttcccgatctggcgcgggcggacagcccgacgatgcgggttggcgctgccgtg
gccgaaggattcggcaaggtcgcgcatgagattcgcatgctcagtctggaaaacgccttt
ctggatgcggatgtggcggatttcgacgggcggatgcgcagctatctggggcttggcccc
gagagtgccttgccctgcaccgcggaaccgaagatcgacgggctctcgctgtccttgcgc
tacgaagacgggctgctggtgcaggccgcgacgcggggcgatggcgaagtgggcgagaat
gtcaccgaaaacgcccgcaccattgccgacattccgcagcgcctgaccggggcgcctgcc
gtgctggaagtccgcggcgaggtctacatgagccatgccgattttgcggcgctgaatgcg
cggcaggcggagcggggcgacaagacgttcgccaatccgcgcaatgccgccgcgggctcc
gtgcgccagctcgacgcccggatcaccgcctccagacccttgaaattctttgcctattcc
tggggcgttctgtccgaaccgctctcggacacgcaattgggcgcgatcgagcggctcaag
gcgctcggctttcagaccaatccgctgacccggctttgcgccgatacggccgaaatgctt
gcccattaccgcgcgatcgaagcgcagcgggccacgcttggctatgacatcgatggcgtc
gtctacaaggtcaacgatcttgccctgcaggcgcggctcggctttcggtcgaccacgccc
cgctgggcgatcgcgcataagtttccggccgaactggcctggacgcggctggaaaagatc
gagattcaggtcggccgcaccggggcgctctcgcccgtggcgcggctggccccggtcacc
gtcggcggtgtcgtcgtctcgaatgcgacgctgcacaacgaggattacatcgccgggctc
tcctcgaagggcgaggtgatccgcgacggcaaggacatccgcgagggcgactgggtgcag
gtctatcgcgccggtgacgtgatccccaaggtcgccgatgtcgatctgtcgcgccgcgat
cccgcagcgcaaccctttgtttttccgcatctttgcccggaatgcggctccgaggcgctg
cgcgaggaaggcgatgccgtgcgccgttgcaccggcggcctgatctgcccggcgcaggcg
gtggagaagctgaaacacttcgtctcccgcgccgctttcgacatcgaggggctgggggca
aaacaggtcgaggccttttacaaggatggctggatccgcgaaccggccgagatcttcacc
cttcaggcgcgcttcggcgccgggctgcaacagctgaagaaccgcgagggctggggcgag
aaatccgcgcaaaacctgtttcaggcgattgaagagaaacgcaaaatcccgcttgcccgg
ctgatcttcgcgcttggcatccgccatgtcggcgaaagctcggccgcccttttcgccacg
cattacctgacctgggagcggttcgaagccgcgatgcgcgccgccgttcccggctcggcc
gaatggcaggagctgctcagcatcgatggcgtcggcgagactttggccgcctcggtgacc
gcggcctttcatcccggcgccgaacgcgacgcgatcgaccggctggtgacgcatctgacc
gtcgagcccgccgtgccgcgcgcaagtgacagcccggtggccggtctgaccgtcgtcttc
accggcacgctcgaacggatgacccgggccgaggcgaaggcgcgcgccgaggcgctgggc
gccaaggtcgcgggctctgtttcggccaagaccgacattctggtggccggtccgggcgcc
ggatcgaaggcgaagaaggccgcggatctgggcgtcagggtgatcgacgaggaggcctgg
atccgcctcatcggggcgacatga
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