Ricinus communis (castor bean): 8283078
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Entry
8283078 CDS
T01087
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04120
Ubiquitin mediated proteolysis
rcu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
8283078
04120 Ubiquitin mediated proteolysis
8283078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcu04121
]
8283078
Enzymes [BR:
rcu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8283078
Ubiquitin system [BR:
rcu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8283078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
8283078
NCBI-ProteinID:
XP_002520020
UniProt:
B9S201
LinkDB
All DBs
Position
10:complement(8260871..8266157)
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AA seq
536 aa
AA seq
DB search
MMRMRTYASLSLIATIAVIYHAFNSRGQFYPAMVYLSTSKINLVLLLNMGLVIMCILWQL
TKRVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPTVPMLSHIRIVSFLGFLLLLDSLFLYSSIKFLLETRQASVSLFFSFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPTQHDINTAGGQHGSQSEAHRQGTG
AANPGTQGSIGGIADDNLSRHQARIQAAAAAASLYEKSFVYPSANTLVWSPGYALLPQAQ
RPLADPTGGEQAFVGQSQPQPAFHAGPSNLTLPQFPQCVFVPFQVPNDGGAQGERLGNMP
NCELEAQKKFLQYQIEVLQRQLQLLHQPKAEDSIHTDPATSSDSKGKAVASSSSSE
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggatgcgaacatatgcaagtctcagtttgattgcaacaatagcagtgatctac
catgcattcaatagtagaggccagttctatccagcaatggtttatctatcaacttctaag
attaatctagttcttcttcttaacatgggacttgttattatgtgcattctgtggcaatta
actaagcgagtgttccttggttctctccgcgaagctgaagttgaaaggttgaatgaacaa
tcttggagggaggttatggaaattctgtttgctattactatttttaggcaggacttctcg
gtgacgtttcttgctatggttacggctttgttgttaattaaggcattgcattggttagcc
cagaagagagttgaatacattgagacaaccccaacagttcccatgttatcacatattcgg
atagtttcatttctgggcttccttcttcttttagatagtctgtttttgtacagctctatc
aagtttttattagaaacacggcaggcttcagtttctctgttcttctcctttgagtatatg
atactagcaacaacaacagtctccacttttgtaaaatatgttttctatgtcagtgacatg
ctaatggaaggacaatgggaaagaaaggcagtctacactttctacttggaacttatacgg
gacttgcttcacttgtctatgtatctttgcttcttcctcgtgattttcatgaactatgga
gtgcccttgcacttaatacgggagctttatgagacattcagaaactttaaaattcgtgtt
gctgattacattcgttatcggaagatcacttcaaatatgaatgatcgatttccagatgca
acacctgaagagcttaatgcaagtgacgcaacctgcattatttgtcgtgaagagatgacc
acagcgaaaaaattactttgtgggcatctttttcatgtccactgtctccgttcatggttg
gaaagacaacatacttgccctacatgcagagccctagttgtaccaccaactcagcatgat
ataaatacagctggagggcagcatggatcacagtcagaagctcatcgacaggggacaggc
gctgcaaatccaggaactcagggctctataggtggtatagctgatgacaatttgagcagg
catcaagctagaatccaagctgctgctgctgctgcctctctatatgagaaatcttttgtt
tacccttctgcaaacactctagtatggtctcctggatatgccttgctcccccaagctcaa
aggcctttggctgaccctactggtggagaacaggcttttgtaggacaatcacagccgcag
cctgcattccatgctggaccttcaaacttgaccctcccacagtttccccagtgtgttttt
gtaccctttcaggtacctaatgacggtggagcacaaggagagagattagggaatatgcca
aactgtgagttggaagctcagaaaaagtttcttcaataccagattgaggtcctgcaaagg
cagctccagcttctacatcagccaaaagccgaggatagcattcatacggatcctgcaaca
tcatcagatagcaaaggcaaggcagttgcatcatcatcctcatccgagtag
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