Roseobacter denitrificans: RD1_3351
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Entry
RD1_3351 CDS
T00376
Symbol
ddlB
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00470
D-Amino acid metabolism
rde00550
Peptidoglycan biosynthesis
rde01100
Metabolic pathways
rde01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RD1_3351 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD1_3351 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
RD1_3351 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
RD1_3351 (ddlB)
Enzymes [BR:
rde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
RD1_3351 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
Precursor biosynthesis
Amino acid ligase
RD1_3351 (ddlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
NAD_binding_8
ATP-grasp_4
ATPgrasp_ST
Motif
Other DBs
NCBI-ProteinID:
ABG32849
RoseoBase:
RD1_3351
UniProt:
Q163J4
LinkDB
All DBs
Position
complement(3218192..3219190)
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AA seq
332 aa
AA seq
DB search
MTVNRRKSRTTKNMTGPEWAHTRGTKVGQSSRTPPKVAVLLGGPSVEREVSLSSGQACAA
ALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHGRWGEDGCVQGLLEWMGVPYSHSGV
LASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRMGHVMQPPYVVKPNNEGSSVGVYLV
HEAANGPPQLSEDMPQEVMVEAFAPGRELTTTVVGDRALTVTDIVTDGWYDYDAKYKPGG
SHHVVPADIPADIFDLCMDYALRAHHALGCRGVSRTDFRWDETKGAAGLILLETNTQPGM
TATSLTPEQAAVTGMTFGKLCAWMVEDASCDR
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
ttgacggtgaaccggcgcaaaagtcggacaactaaaaacatgacgggccctgaatgggct
cataccagaggcaccaaggtgggtcagtcgagcaggacacccccgaaagtggcagtatta
ttgggcggaccttcggttgaacgcgaggtgtcgctgtccagtgggcaagcctgcgctgcc
gctttgcgggacgaaggatatgatgtcgtcgaaatcgacgcgggccatgaccttggcgcg
cgcctgatcgacgcaggcccggatgccgtcttgaattgcttgcatggccggtggggcgag
gatggctgcgtgcagggcctgctggagtggatgggcgtgccctacagccactccggtgtt
ttggcctccgccctcgcgatggacaagcagcgtagcaaggacgcattcgttgcggcgggt
ttgcccgttgtgcccagtgtgattgccaaggccgctgatgtgcgcatgggccacgtgatg
cagcccccctatgtggtcaaacccaacaatgaaggctcctccgtgggcgtttacctcgtt
cacgaggcggcgaacggcccgccgcagctctcggaagatatgccgcaggaggtcatggtc
gaagccttcgcgccggggcgtgaattgaccacgacggttgtgggggaccgtgcgctgacc
gtcaccgacatcgtcacagatgggtggtatgactatgatgccaaatacaaacccggtggg
tcccatcacgttgtgccggcggatattcctgctgatatattcgatctgtgcatggactac
gcgctgcgcgcccatcacgccttgggctgtcgcggtgtcagccgcacggatttccgatgg
gacgaaacaaagggtgctgcgggcctgatcctgctggagacaaatacccagccgggtatg
acggccacgtcgcttacgcccgagcaggcggcggtcacgggcatgacctttggcaagctc
tgcgcgtggatggtggaggacgcctcatgcgaccgttga
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