Rothia dentocariosa: HMPREF0733_11837
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Entry
HMPREF0733_11837 CDS
T01343
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
rdn
Rothia dentocariosa
Pathway
rdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0733_11837 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_11837 (uvrB)
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0733_11837 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF0733_11837 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_16
DUF815
UvrD-helicase
nSTAND3
AAA_5
Sigma54_activat
AIG1
AAA_7
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADP41294
UniProt:
E3H1Y4
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All DBs
Position
2036466..2038634
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AA seq
722 aa
AA seq
DB search
MSLAPEIKRVVAPFEVVSPYQPAGDQPKAIVELTERVENGEKDIVLMGATGTGKSATAAW
LVESVQRPTLVMVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK
DSSINEEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLERGDEIDRDD
LLRQFVNMQYARNDMDFHRGTFRVRGDTVEIIPMYEEHAIRIEFFGDEIEAIYTLHPLTG
EVIREEDEMYVFPASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTY
DLEMMEQMGFTSGIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYE
GDMSRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADGYVEQII
RPTGLVDPEIIVKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRV
QYLHSDVDTLKRVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTT
SLIQTIGRAARNVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKI
ADITDVLAREEEDTHELLQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQ
DRVRADGLAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLKKEFRQMREAG
HA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgctccggagattaaacgagtcgtagccccttttgaagttgtcagtccatat
cagccagctggtgatcagcctaaggctattgttgagcttactgagcgcgtggagaacggt
gaaaaagacatcgttctgatgggtgccaccggcaccggtaaatctgctacggcggcatgg
ctggtcgaatctgtgcagcgtcctacgcttgttatggtgcagaataagactcttgctgcc
cagttagccaatgaactgcgtgagctcttgcccaataacgcagtcgagtatttcgtctca
tactatgactactatcagcctgaggcatatgttccgcagacggatacttttattgagaaa
gactcctcgatcaatgaagaagtagaacgcctgcggcactctgctacgaattcccttttg
actcgccgcgatgttgttgtggtctcgactgtatcgtgtatttacggtttgggtacgccc
gaagaatatgtggagcagatggtcactcttgagcgcggggatgagatagatcgtgatgac
ctgctgcgccaattcgtgaatatgcagtacgcccgtaacgacatggattttcaccgtgga
acctttcgggtgaggggcgatactgtcgaaatcatccctatgtacgaagagcatgctatt
cgtattgaattcttcggcgatgagattgaggctatttatactctgcacccgctcacgggt
gaggttattcgagaggaagacgagatgtatgtcttcccagcgagccactatgttgccggt
cctgagcgcatggctcgcgctattgcctctatcgaagacgaactccaggaacgtttacaa
acgctagaatctcaggggaagctgctggaggcacagcgactacgtatgcgtaccacctat
gaccttgagatgatggaacagatggggttcaccagcggtattgagaactattcacgccat
atcgacggtcgttcagcaggttcggctccgcattgtctgttagactatttccccgatgat
ttcctgcttattatcgacgagtcacacgtgacggtacctcaaatcggtgccatgtacgag
ggcgatatgtctcgtaaacgtacgctcgtggaacatgggttccgtctgccttctgccatg
gacaaccgccctctaaaatgggatgaattcttagagcgcatagggcaaactatttatctt
tcggctactcccggcaagtatgagctttcgcaggctgatggttatgttgagcagattatt
cgtccaacaggactggtggacccagagattattgtaaagcctacgaaggggcagattgac
gaccttcttgaacaaattcaagagcgtactgaacgcgacgagcgtgttttggtgacgact
ctaaccaaacgtatggcagaagacttgaccgagtatttggtgcagcatggagtacgtgtg
caatatttgcactccgatgtagatactctcaaacgcgtagagctgttacgtgagcttcgc
atgggcacttttgatgttctggtaggtattaatctgcttcgtgagggactggaccttcct
gaggtttcactggtggctattttggacgctgataaagaaggattcttacgttcgacgacc
tcgctcatccagacgattggtcgtgcagcgcgtaacgtctcggggcaggtacatatgtat
gcagatactgttaccgattcaatgcgtactgctattgacgagacgaaccgtcgtcgagag
attcagcaggcgtataaccgggagcacggcatagatccgcagcctctgaggaagaaaatt
gcggatattacagatgttctcgctcgcgaagaggaagacacacatgagcttttgcaatta
cgcaagagcggtaagaaaggttctcgaacagttgaagccggagcgaagacagggtcaagt
acttcttcgaagatcgcagcaagtaccccagagtcggatgctcttcttgccaaagctcaa
gaccgtgttcgcgccgatggtctcgcagctgagcctgctgaggatctgttggaacttatc
gaacaattgagtgagcagatgcgtctggctgcagaaaacctgcagtttgagttagcggca
cgtttacgtgatgaacttaccgatctcaaaaaagaatttcggcagatgcgagaagctggg
catgcgtaa
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