KEGG   Rhizobium etli CIAT 652: RHECIAT_CH0000692Help
Entry
RHECIAT_CH0000692 CDS       T00720                                 

Definition
(GenBank) probable ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rec  Rhizobium etli CIAT 652
Pathway
rec03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHECIAT_CH0000692
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rec03400]
    RHECIAT_CH0000692
Enzymes [BR:rec01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHECIAT_CH0000692
DNA repair and recombination proteins [BR:rec03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHECIAT_CH0000692
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACE89681
UniProt: B3PPH4
LinkDB All DBs
Position
complement(686394..688901)
Genome map
AA seq 835 aa AA seqDB search
MALETYQAKRNFKLTPEPRGQKGRSTGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLNPEDKRLAVHVEDHPLSYGDFEGIIPKGQYGGGTVIVWDRGTWTPVGDADKAYRKGH
LEFELDGEKLKGRWHLVRMHGRPGEARENWLLIKGDDAEARHDGNILEERPESAKTGRQL
EEVAENPDATWKSRSGNGKAVAAKTPAQKAKPSGSGERQWPKGARKGAMPDFIEPVLAKL
KPKPPAGDRWIHEIKFDGYRLQVRMEDGKVRMLTRSGLDWTAKFGKDVLDAFAALPVQSA
VIDGEIVVESDSGASDFSALQRDLSEGRNDRFVFYAFDLLHLDGHNLLDARLIDRKHLLE
SLLPADNDKLRYSAHFNERGGLVLDHACRLSLEGVLSKLRDSKYTSGRKGDWIKSKCSHR
QEFVIGGYVPSTSMKNAIGSLAMGYYRDGELKHVGRVGTGYTVATAQMLYEKLSRMTQNE
NSFDDKLTAEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKLAKEVTRETEQ
TAAPLPKAAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLPDGIN
GRQRFFQKHAWKGMNPHIEEIIDPKDKQGEKLLRITDFDGVVALVQSAVLEIHPWGTTTD
NWEKPDMITMDLDPGEAVAWEDVIVAAYELKARLEAEGLAAFVKTSGGKGLHVVTPLAPK
ASWVEVKAFAKGLADSMSADDPDRYLATATKAKRKGRIFIDYLRNGRGNTAVAAYSTRAR
PGAAVSMPLEWSELTADIGPAYFTVDNTPTRLDALPGDPWDGFFAAAKPLEKKKG
NT seq 2508 nt NT seq  +upstreamnt  +downstreamnt
atggccctcgagacctatcaggcgaagcgcaatttcaaactcaccccggagccgcgcggg
cagaagggccgcagcaccggcaacagtttcgtcatccagaagcatgatgcgaccaggctg
cattatgacttccggctcgagatggatggggtgctgaagagctgggcggtgacgaagggg
ccgagcctcaacccggaggacaagcgcctggccgtgcatgtcgaagaccacccgctgtcc
tatggcgatttcgaaggcatcatcccgaaagggcagtatggcggcggcaccgtcatcgtc
tgggaccgcggcacctggacgccggtcggcgacgctgacaaggcctaccggaaaggtcat
ctggaattcgagctcgacggcgagaagctgaagggacgctggcacctcgtgcgcatgcac
ggccggcccggcgaggcgcgcgagaactggctgctgatcaagggggatgatgccgaggcg
cgccatgacggaaatattctcgaggaacggccggaatcggccaagacaggccggcagctc
gaagaggtggcggaaaatcccgatgcgacctggaagtccagatccggaaacggcaaggcg
gttgccgccaagacgccggcacaaaaggcgaagccgtcgggatccggcgaacgccaatgg
cctaaaggcgcgcgcaagggcgcaatgcccgacttcatcgaaccggtgcttgccaagctg
aaaccgaagccgccggcgggcgatcgctggatccacgagatcaagttcgacggctatcgg
ctgcaggtcaggatggaggacggcaaggtccgtatgttgacccgcagcggtctcgactgg
acggcaaaattcggcaaggacgtgctcgacgcctttgccgccctgccggtgcagtcggcg
gtgatcgatggcgaaattgtcgtcgagagcgatagcggcgcctcggatttctcagcgctc
cagcgcgatctgagcgagggccgcaacgaccgcttcgtcttctatgctttcgatctcctt
catctcgacggccacaacctgcttgatgccaggctcatcgatcgcaagcatctgctggaa
agcctgctgcccgccgataatgacaagctgcgttacagcgcgcatttcaacgaacgcggc
ggcctggtgctcgatcatgcctgccggctcagcctcgaaggcgtactctccaagctgcgc
gacagcaaatacacctcgggacgcaagggcgattggatcaaatcgaagtgctcgcaccgg
caggaattcgtcatcggcggctacgtgccatcgacatcgatgaagaatgcgatcggttcg
ctggcgatgggctattaccgagatggcgagctcaagcatgtcgggcgggtcggcaccggg
tatacggtggccaccgcgcagatgctttatgagaagctgtcgcggatgacgcagaacgag
aactccttcgacgacaagctcaccgccgaggagaggcgtgggctgatctatgtcaagccg
cagctggtcggcgaagtcgagttccgcgcctggtcggccgacggcaatctgcgccatgca
gccttccgcggactgcgcgaggacaagctcgccaaagaggtgacgcgcgagacggaacag
accgcagcccccctgccgaaagccgctgtgacgctcactcaccccgaccgtatctactgg
ccggacgaaggtgttaccaaggaagggctggcgaactattatgcgcaggtctggcgcttc
atggcgccctacgtcgtcaaccgccctttggcgctcttgcgtctgccggacggaatcaac
ggtcgtcagcgtttttttcaaaagcacgcctggaaaggcatgaaccctcatatcgaggaa
atcatcgatccgaaggacaagcagggagagaagttgctgcggataaccgatttcgacggg
gtcgtggcgctggtgcaatcggccgtgcttgaaatccacccatggggcacgacgaccgac
aattgggaaaagcccgacatgatcaccatggacctcgatcccggcgaggcggtggcgtgg
gaagatgtgatagtcgccgcttacgaattgaaggcgcggctggaagccgaaggcctcgcc
gccttcgtcaagacgtcaggcggcaaggggctgcatgtggtgacgccgctcgcgccgaaa
gccagctgggtggaggtgaaggctttcgccaaagggctggccgacagcatgtcggccgat
gatcccgaccgttatctcgccacggcgacgaaggccaagcgcaaagggcggatcttcatc
gattatctgcgcaatggccgcggcaacacggcggttgcagcctattccacacgcgcaagg
ccgggtgcggccgtttccatgccgctggaatggagcgaactgaccgccgacatcgggccg
gcctatttcactgtcgacaatacgccgacgcggctcgacgccttgcccggagatccctgg
gatggatttttcgcggcggcgaaaccgttggaaaagaagaaaggatag

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