Cupriavidus necator H16: H16_A1455
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Entry
H16_A1455 CDS
T00416
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
reh
Cupriavidus necator H16
Pathway
reh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
reh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H16_A1455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reh03400
]
H16_A1455 (mfd)
Enzymes [BR:
reh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H16_A1455 (mfd)
DNA repair and recombination proteins [BR:
reh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H16_A1455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CAJ92590
UniProt:
Q0KBN1
LinkDB
All DBs
Position
1:complement(1575433..1578882)
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AA seq
1149 aa
AA seq
DB search
MPDAKPAFPFVNLPLVKPGLRHSVAGLRGSADALAVAAYARQHRERAPMLAVVCSHAVDA
QRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPAT
TALYRLAPPAFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
YPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
RELFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFFEQSATVFDYLPADTQLAFAGNVDEAI
RRFWADTTQRYNFMRHDRERPLLPPADLFLSEEQFFVAAKPMARLVLQAEANADQAAFSA
ILPDVAVNRRADDPLVNLEALLLDQQTRVLMCADSAGRRETLLQLFAESGLRPQPVDDFA
AFLAGEAHFSIAVAPLQSGFALPQGQIAFVTEAELYAGTARRTGRRKQEQASAVDSMVRD
LAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLDYDKGSKLYVPVHQLHVISRYS
GADPDTAPLHHLGSGQWDKAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSPKDYETF
AESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVA
MLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTKKEIDAAIRQINEGTVDIVIGTHKI
LSDQVRFERLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDF
SVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELV
PEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRSDKFGL
AQLHQLRGRVGRSHHQAYAYLLVHDVEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIR
GAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKALKAGKEPDLMAPLAATTEINLGTPALLP
NDYCADVHERLSLYKRLANCETAERVDDIQEELIDRFGRLPAQAQALVETHRLRIAAAPL
GVRKIDAGEATISVQFVPNPPIDAMRIIDLVQKNRHIKLAGQDKLRIEAKMPDVAIRAQT
IKHTLRQLA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgccaagcccgccttcccctttgtcaacctgccgctggtcaagccggggctg
cgccacagcgtggcgggcctgcgcggctcggccgatgcgctggctgtggccgcgtacgct
cggcagcaccgcgagcgcgcgccgatgctggccgtagtctgctcccacgcggtcgatgcc
cagcgcctggccgaggaaatcccctggttcgcgcccgaactgcgcgtgcgcctgctgccc
gactgggaaaccctgccctacgacagcttctcgccgcaccaggacctggtatcagagcgc
ctggccacgctgcacgacatccagaccgggcaatgcgacgtgatgctggtgccggccacc
accgcgctgtaccggctggcgccgcccgcgttcctggccgcctacaccttcttcttcaag
cagggcgagcggctggatgaagcggcgctcaaggcccagttcacgctggcgggctacgag
cacgtcagcgcggtgatgcgccccggcgaatacagcgtgcgcggcggcctgatcgacctg
tacccgatgggctcggcgctgccgtaccggatcgacctgttcggcgacgagatcgagacc
atccgcgccttcgaccccgacacccagcgcagcctgtacccggtcaaggaggtgcggctg
ctgcccgggcgcgagttcccgctcgacgaagccgcgcgcaccgccttccgcggccgctgg
cgcgagctgttcgaaggcgacccaaccaagtcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtactacctgccgctgttcttcgagcagagcgcgaccgtg
ttcgactacctgcccgccgatacgcagctcgcgttcgccggcaatgtcgacgaggccatc
cgccgcttctgggccgacaccacgcagcgctacaacttcatgcggcacgaccgcgagcgc
ccgctgctgccgccagcggacctgttcctgtccgaggagcagttcttcgtcgccgccaag
ccgatggcgcgcctggtgctgcaggccgaagcgaacgcggaccaggccgcgttctcggcc
atcctgcccgacgtcgcggtgaaccgccgcgccgatgatccgctggtcaacctggaagcg
ctgctactcgaccagcagacccgcgtgctgatgtgcgccgactcggccgggcggcgcgag
accctgctgcagctctttgccgaaagcggcctgcgcccgcagccggtggacgactttgcc
gcgttcctggccggcgaagcgcatttctcgatcgcggtggcgccgctgcagagcggcttt
gcgctgccgcaggggcagatcgcctttgtcaccgaggccgagctgtacgccggcaccgcg
cgccgcaccggccgccgcaagcaggagcaggcctccgccgtcgactcgatggtgcgcgac
ctggccgagttgaagatcggcgacccggtggtgcacagcgagcacggcatcggccgctat
cagggcctggtcacgctcgacatgggccagggcgacgaggaattcctgcacctggactac
gacaagggcagcaagctgtatgtgccggtgcaccagttgcatgtaatctcgcgctattcc
ggcgccgatcccgataccgcgccgctgcaccacctgggctcgggccagtgggacaaggcc
aagcgcaaggcagcccagcagatccgcgacaccgccgccgagctgctcaacctgtacgcg
cgccgcgccgcgcgcgagggctttgccttcccgctctcgcccaaggactacgagaccttc
gccgaaagcttcggcttcgaggaaacgccggaccaggccgccgcgattgccgcggtgatc
gccgacatgacctcgggcaagccgatggaccggctggtgtgcggcgacgtgggcttcggc
aagaccgaggtggcgctgcgcgcggcctttgtcgcggtgctgggcggcaagcaggtggcg
atgctggcgccgaccacgctgctggccgagcagcacttccagacgctgtccgaccgcttc
gccgaatggccggtgcgcatcgtcgagctgtcgcgcttcaagaccaagaaggaaatcgac
gcggccatcaggcagatcaacgaaggcaccgtcgacatcgtcatcggcacccacaagatc
ctgtccgaccaggtcaggttcgagcgcctggggctggtcatcatcgacgaggaacaccgc
ttcggcgtgcgccagaaggaggcgctgaagaccctgcgcgccgaggtcgacgtgctgacc
ctgaccgccacgccgatcccgcgcacgctgggcatggcgctggaaggcctgcgcgacttc
tcggtgatcgcgaccgcgccgcagaagcggctggcgatcaagaccttcgtgcggcgcgag
gaagacggcgtgatccgcgaggccatcctgcgcgagctcaagcgcggcggccaggtctac
ttcctgcacaacgaggtcgagaccatcgagaacaagcgcgcgcggctggccgagctggtg
cccgaagcgcgcattgccgtcgcgcacggccagatgcatgagcgcgagctggagcgcgtg
atgcgcgacttcgtcgcgcgccgcgacaacatcctgctgtgcaccaccatcatcgagacc
ggcatcgacgtgccgaccgccaacaccatcctgatccaccgctcggacaagttcggcctg
gcgcagctgcaccagctgcgcggccgggtcgggcgctcgcaccaccaggcctatgcctac
ctgctggtgcatgatgtcgagggcctgaccaagcaggcgcagcgccggctcgaagcgatc
cagcagatggaggaactgggctcgggcttctacctggccatgcatgacctggaaatccgc
ggcgcgggcgaggtgctgggcgacaagcagtcgggcgagatccacgagatcggcttccag
ctctacactgacatgctcaacgccgcggtcaaggcgctcaaggccggcaaggaacccgac
ctgatggcgccgctggccgcgaccaccgagatcaacctgggcacgccggcgctgctgccc
aacgactactgcgccgacgtgcacgagcggctgtcgctgtacaagcgactggccaactgc
gagaccgccgagcgcgtggacgatatccaggaagagctgatcgaccgcttcggccgactg
ccggcgcaggcgcaggcgctggtcgagacccaccggctgcgcatcgccgcggcaccgctg
ggcgtgcgcaagatcgacgcgggcgaggccaccatcagcgtgcagttcgtgcccaacccg
ccgatcgacgcgatgcgcatcatcgacctggtgcagaagaaccgccatatcaagctggcc
gggcaggacaagctgcgcatcgaggccaagatgccggacgtggcgatccgcgcgcagacc
atcaagcatacgttgcggcaactggcgtag
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