Rhizobium etli bv. mimosae IE4771: IE4771_CH01673
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Entry
IE4771_CH01673 CDS
T03310
Name
(GenBank) RNA-metabolising metallo-beta-lactamase hydrolase protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE4771_CH01673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rei03019
]
IE4771_CH01673
Messenger RNA biogenesis [BR:
rei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IE4771_CH01673
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
AIC26811
UniProt:
A0A060I5M3
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Position
1680146..1681816
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AA seq
556 aa
AA seq
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MVKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLASERKNLKAIIITHAHEDHYGALADLWPGLNVPVYASGFTAGLLEAKRNFEKARIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPAGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIEDAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVDVAQDIGLMEGVKPFISEEEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKVVVPVHGEATHLTAHKELAEQSGIAIVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGMLIGDFDEMGIGERKKLSYVGHVAVSVVLDARYDI
VGDPDLVSIGLPVYDDEGDEMEDTLFDAAISAIESIPRARRKDIDMLQEAVRRAIRAAAN
QSWGKKPVVTAFVTKV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaacaggacgagttggtattcctgcctctgggcggcgttggcgagatcggcatg
aatctcgctctctatggctacggcccgcccgagcatcgccagtggatcatggtcgattgc
ggcgtcacctttcccggcccggatctgccgggcgtcgacctcgtcctgcccgacatccgc
ttcctcgccagcgaacgcaagaacctcaaggcgatcatcatcacccatgcccatgaagat
cattatggcgcactcgccgatctctggcccgggctcaacgtgccggtctatgcctcgggc
tttaccgcgggtctgctcgaagccaaacgcaatttcgagaaggcgaggatcggcgaggtg
ccggtgacgccgttcaaggccggcgacacgatcaatgtcggcccgttcagcatcgaaggt
gttgccgtcaatcactcgatccccgagccgatgtcgctgatgatccgcacgccggccggc
aatgtcatccacaccggcgactggaagatcgaccacgagccctcgctcgggccgctgacc
gatgagacgcgctttcgccagttgggcgacgagggcgtgctggcgctgatgtgcgattcc
accaatgccttgcgtgacggtgtttcgccctccgagaaggatgtgtccgaaagcctgcgc
aagattatcgaagatgccgaaggccgggtggcgatcaccaccttctcgtcgaatgtcggg
cgcatccgcaccgttgccgaggccgccgaggcggcgggccgcgaagtactgctgctcggc
agctcgctgaagcgggtcgtcgacgtcgcccaggatatcggcctgatggaaggcgtgaag
cccttcatctccgaggaggaatacggctacatcccccgcgacaaggtcgtcgtcatcctg
accggcagccagggcgaggcgcgggcagcgcttgccaagctctcccgcgacgagatgcgc
aatgtggcctttgcggcaggcgatatcgtcgtcttttcctcgcgcgccattcccggtaac
gagaaggcgatccaggacatcaagaacggcctcgtcgagcagggcgtgcacatcatcacc
gatactgaagccctggtccacgtgtccggccatccccgccgcaacgagctgcagcggatg
tacgagtggacccggccgaaggtcgttgtgccggtgcatggcgaggcgacgcatctgacg
gcgcacaaggagcttgccgagcaatccggcatcgcgatcgtcccgcgggtgcgcaacggc
gatatcctgcggctggcgccaggcccggtcgaggtgatcggcgaagcgccgcacggccgc
atctacaaggacggcatgctgatcggcgatttcgacgagatggggatcggcgagcgcaag
aagctttcctatgtcggccatgtcgcggtcagcgtcgtgctcgacgcccgttatgatatt
gtcggcgatcccgatctcgtatcgatcggcctgccggtctatgacgacgagggcgatgag
atggaggatacgctgttcgacgcggcgatcagcgccatcgaaagcattccgcgcgcccgc
cgcaaggatatcgacatgctgcaggaggccgtgcgccgcgccatccgcgccgctgccaac
cagagttggggcaagaagccagtcgtaaccgccttcgtcaccaaggtctga
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