Rhizobium etli bv. mimosae IE4771: IE4771_PD00652
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Entry
IE4771_PD00652 CDS
T03310
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IE4771_PD00652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rei03400
]
IE4771_PD00652
Enzymes [BR:
rei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IE4771_PD00652
DNA repair and recombination proteins [BR:
rei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IE4771_PD00652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AIC31206
UniProt:
A0A060IHZ0
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All DBs
Position
pRetIE4771d:complement(706991..709627)
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AA seq
878 aa
AA seq
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MADNLSKYRAKRDFKKTREPSGEAGVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLEGKRLHGSFVLVRMRHDRDGGKRTNWLLIKHHDEHSVEENGAAILKENA
TSVASGRSMDEIAEGKGRKPRPFMMAKADVEADAVWDSKHGLAADERKKKSPKDVATSTA
ADLPDFIEPQLCDRLDRPPAGDDWLHEIKFDGYRIQMRVADGEVTLKTRKGLDWTSKYSG
IAEAASGLPDCIIDGEICALDENGAPNFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLFERKERLQNLLTAAGDDPRIRYVEHFQSGGDAVLRSACKLHLEGVISKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYAKTNGRFRSLLVGVHRGDHFVYVGRVGTGYGAKKVEMLL
PKLKALETTKSPFGGIGAPKKQAEVVWLKPELVAEIEFEGWTTDGLVRQAAFKGLREDKP
AKEVEAEKPAPPAQTETAGPAAAAKHKSARRKGAKAEVMGVLISNPDKPLWPDAGDGEPV
TKEDLARYHEAVGAWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQVDRIEGLAAIAQIGGVELHPWNCQPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
QMRDRLDELGLVSFCKTTGGKGLHVVTPLAVNKRKPLAWAEAKGFAHDVCQQMARDNPDL
YLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARAGATVSMPLTWEQVKSDLDPKRFT
LRTVPALLTKSSAWQDYCDSERPLEQAIKRLGKSRRAA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacctctcgaaatacagggccaagcgcgatttcaagaagacccgcgaaccg
agcggggaagcgggcgtcaaaccgtcgaaccgccggcggttcgtgatccagaagcacgac
gccacacggcttcactatgacctcaggctcgagctcgacggcgtgttcaagtcctgggcg
gtgaccaagggaccctcgctcgatccgcatgacaagcgcctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggcacgatcccgaagggccaatatggcggcggc
acggtgatgttgtgggaccgcggttattgggagccggaaggccgcaagtctccggaagag
gctttgagaaaaggcgacttcaagttcacgctcgagggcaagcgactgcacggcagcttc
gtcctggttcggatgcgtcatgaccgcgatggcgggaagcgcacgaattggctgctgatc
aaacatcacgacgaacattcagtcgaggaaaacggtgcggcgatcctgaaggagaatgcg
acctccgtcgcctccggccgcagcatggatgagatcgccgaaggcaaggggcgcaagccg
cgaccgttcatgatggcgaaggcggatgtcgaggcggacgccgtgtgggacagcaagcat
ggtctggccgccgatgagcgcaagaagaagtctcctaaggatgtcgcaacctccaccgcg
gccgacctgccagatttcatcgagccgcagctttgcgataggctcgatcggccacccgcc
ggcgatgattggctgcacgaaatcaagttcgacggctatcggatccagatgcgggtcgcc
gatggagaggtgacgctgaagacgcgcaaaggcctcgattggacgtccaaatattctggg
attgcggaagccgcgtccggactgcccgactgcatcatcgatggcgagatctgcgcgctc
gatgagaatggcgcaccgaatttcgccgcacttcaggcggctctgtcggaaggcaagacc
ggtaacctcgtctatttcgccttcgacctgctcttcgatggcggagaggacttgcggtcg
atgcgcctgttcgagcgcaaggagcggctgcaaaaccttctcacagctgccggcgacgat
cctcgcatccgctacgtcgaacatttccaatccggtggcgacgcggtgctgcgctccgcc
tgcaagctgcacctcgaaggagtcatctccaagcagatggacgcaccctatcagtccggc
cgcaccgacacctgggcaaagtcgaaatgtcgcgccggacacgaggtggtgatcggcggt
tatgccaagaccaacggcaggttcagatctctcctggtcggcgttcaccgcggcgatcac
tttgtctatgtcggccgtgtcggaaccggctacggcgcgaagaaagtcgaaatgctgctg
ccgaaactgaaggcgctcgagacgacgaaatcgcctttcggcggtatcggtgctccgaag
aagcaggccgaagtggtctggttgaagccggagcttgtcgccgaaatcgaatttgaaggg
tggaccacggacggcctcgtccgccaggctgccttcaagggcctgcgcgaggacaagccg
gcgaaagaggtcgaggccgaaaagccggcgccgcctgcccagactgaaaccgcgggaccg
gccgcggctgccaaacataagtctgcccgccgcaaaggcgcgaaggccgaggtcatgggt
gttctcatttcgaatcccgacaagccgctctggccggacgcgggcgacggagagccggtc
acaaaggaggaccttgcgcgctatcacgaggccgtcggagcttggcttatcgagcatatc
aagggccgaccctgctcgatcattcgagcacccgacggaattggcggcgagcagttcttt
cagcgtcacgcgatgcccggcacttcgaacctccttgaactggtgaaggtgttcggggac
aagaagccttacctgcaggtcgatcggatcgaggggctggcggcgatcgcccagatcggc
ggcgttgaactgcatccgtggaactgccaacccggcaagccggaagtgcccggccgcctg
gtgttcgacctcgaccctggtcctgacgtgccgtttgcgacggtggtcgcagccgcccgc
cagatgcgcgaccgtctcgatgaactcggcctcgtcagcttctgcaagaccaccggcggc
aagggcttgcatgtcgtgacgccgcttgcggtcaacaagcgcaagcccctcgcgtgggcg
gaggccaagggctttgcccatgacgtttgccagcagatggcgcgcgacaatcccgacctc
tacctgatcaagatgaccaagagtcttcgtggcggcaggatcttcctggattatctccgc
aacgatcgcatggcgacggcggttgcgccgctctcaccgcgcgcccgcgccggcgccacc
gtgtccatgccgcttacctgggagcaggtgaagtccgatctcgacccgaaacgttttacg
cttcgaacggtgccggcgcttctgaccaagagctctgcctggcaggactattgcgacagc
gagcggccgctggaacaggcgatcaagcgtctcggaaaatcgcgacgagcagcgtga
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