KEGG   Rhizobium sp. IE4771: IE4771_PD00652Help
Entry
IE4771_PD00652    CDS       T03310                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rei  Rhizobium sp. IE4771
Pathway
rei03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IE4771_PD00652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rei03400]
    IE4771_PD00652
Enzymes [BR:rei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IE4771_PD00652
DNA repair and recombination proteins [BR:rei03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IE4771_PD00652
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AIC31206
UniProt: A0A060IHZ0
LinkDB All DBs
Position
pRetIE4771d:complement(706991..709627)
Genome map
AA seq 878 aa AA seqDB search
MADNLSKYRAKRDFKKTREPSGEAGVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLEGKRLHGSFVLVRMRHDRDGGKRTNWLLIKHHDEHSVEENGAAILKENA
TSVASGRSMDEIAEGKGRKPRPFMMAKADVEADAVWDSKHGLAADERKKKSPKDVATSTA
ADLPDFIEPQLCDRLDRPPAGDDWLHEIKFDGYRIQMRVADGEVTLKTRKGLDWTSKYSG
IAEAASGLPDCIIDGEICALDENGAPNFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLFERKERLQNLLTAAGDDPRIRYVEHFQSGGDAVLRSACKLHLEGVISKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYAKTNGRFRSLLVGVHRGDHFVYVGRVGTGYGAKKVEMLL
PKLKALETTKSPFGGIGAPKKQAEVVWLKPELVAEIEFEGWTTDGLVRQAAFKGLREDKP
AKEVEAEKPAPPAQTETAGPAAAAKHKSARRKGAKAEVMGVLISNPDKPLWPDAGDGEPV
TKEDLARYHEAVGAWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQVDRIEGLAAIAQIGGVELHPWNCQPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
QMRDRLDELGLVSFCKTTGGKGLHVVTPLAVNKRKPLAWAEAKGFAHDVCQQMARDNPDL
YLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARAGATVSMPLTWEQVKSDLDPKRFT
LRTVPALLTKSSAWQDYCDSERPLEQAIKRLGKSRRAA
NT seq 2637 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaacctctcgaaatacagggccaagcgcgatttcaagaagacccgcgaaccg
agcggggaagcgggcgtcaaaccgtcgaaccgccggcggttcgtgatccagaagcacgac
gccacacggcttcactatgacctcaggctcgagctcgacggcgtgttcaagtcctgggcg
gtgaccaagggaccctcgctcgatccgcatgacaagcgcctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggcacgatcccgaagggccaatatggcggcggc
acggtgatgttgtgggaccgcggttattgggagccggaaggccgcaagtctccggaagag
gctttgagaaaaggcgacttcaagttcacgctcgagggcaagcgactgcacggcagcttc
gtcctggttcggatgcgtcatgaccgcgatggcgggaagcgcacgaattggctgctgatc
aaacatcacgacgaacattcagtcgaggaaaacggtgcggcgatcctgaaggagaatgcg
acctccgtcgcctccggccgcagcatggatgagatcgccgaaggcaaggggcgcaagccg
cgaccgttcatgatggcgaaggcggatgtcgaggcggacgccgtgtgggacagcaagcat
ggtctggccgccgatgagcgcaagaagaagtctcctaaggatgtcgcaacctccaccgcg
gccgacctgccagatttcatcgagccgcagctttgcgataggctcgatcggccacccgcc
ggcgatgattggctgcacgaaatcaagttcgacggctatcggatccagatgcgggtcgcc
gatggagaggtgacgctgaagacgcgcaaaggcctcgattggacgtccaaatattctggg
attgcggaagccgcgtccggactgcccgactgcatcatcgatggcgagatctgcgcgctc
gatgagaatggcgcaccgaatttcgccgcacttcaggcggctctgtcggaaggcaagacc
ggtaacctcgtctatttcgccttcgacctgctcttcgatggcggagaggacttgcggtcg
atgcgcctgttcgagcgcaaggagcggctgcaaaaccttctcacagctgccggcgacgat
cctcgcatccgctacgtcgaacatttccaatccggtggcgacgcggtgctgcgctccgcc
tgcaagctgcacctcgaaggagtcatctccaagcagatggacgcaccctatcagtccggc
cgcaccgacacctgggcaaagtcgaaatgtcgcgccggacacgaggtggtgatcggcggt
tatgccaagaccaacggcaggttcagatctctcctggtcggcgttcaccgcggcgatcac
tttgtctatgtcggccgtgtcggaaccggctacggcgcgaagaaagtcgaaatgctgctg
ccgaaactgaaggcgctcgagacgacgaaatcgcctttcggcggtatcggtgctccgaag
aagcaggccgaagtggtctggttgaagccggagcttgtcgccgaaatcgaatttgaaggg
tggaccacggacggcctcgtccgccaggctgccttcaagggcctgcgcgaggacaagccg
gcgaaagaggtcgaggccgaaaagccggcgccgcctgcccagactgaaaccgcgggaccg
gccgcggctgccaaacataagtctgcccgccgcaaaggcgcgaaggccgaggtcatgggt
gttctcatttcgaatcccgacaagccgctctggccggacgcgggcgacggagagccggtc
acaaaggaggaccttgcgcgctatcacgaggccgtcggagcttggcttatcgagcatatc
aagggccgaccctgctcgatcattcgagcacccgacggaattggcggcgagcagttcttt
cagcgtcacgcgatgcccggcacttcgaacctccttgaactggtgaaggtgttcggggac
aagaagccttacctgcaggtcgatcggatcgaggggctggcggcgatcgcccagatcggc
ggcgttgaactgcatccgtggaactgccaacccggcaagccggaagtgcccggccgcctg
gtgttcgacctcgaccctggtcctgacgtgccgtttgcgacggtggtcgcagccgcccgc
cagatgcgcgaccgtctcgatgaactcggcctcgtcagcttctgcaagaccaccggcggc
aagggcttgcatgtcgtgacgccgcttgcggtcaacaagcgcaagcccctcgcgtgggcg
gaggccaagggctttgcccatgacgtttgccagcagatggcgcgcgacaatcccgacctc
tacctgatcaagatgaccaagagtcttcgtggcggcaggatcttcctggattatctccgc
aacgatcgcatggcgacggcggttgcgccgctctcaccgcgcgcccgcgccggcgccacc
gtgtccatgccgcttacctgggagcaggtgaagtccgatctcgacccgaaacgttttacg
cttcgaacggtgccggcgcttctgaccaagagctctgcctggcaggactattgcgacagc
gagcggccgctggaacaggcgatcaagcgtctcggaaaatcgcgacgagcagcgtga

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