KEGG   Rhizobium etli bv. phaseoli IE4803: IE4803_PC00640Help
Entry
IE4803_PC00640    CDS       T03667                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rep  Rhizobium etli bv. phaseoli IE4803
Pathway
rep03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IE4803_PC00640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rep03400]
    IE4803_PC00640
Enzymes [BR:rep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IE4803_PC00640
DNA repair and recombination proteins [BR:rep03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IE4803_PC00640
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AJC83185
UniProt: A0A0A8GNR5
LinkDB All DBs
Position
pRetIE4803c:complement(689639..692275)
Genome map
AA seq 878 aa AA seqDB search
MADNLSKYRAKRDFKKTREPSGEAGVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLEGKRLHGSFVLVRMRHDRDGGKRTNWLLIKHHDEHSVEENGAAILEENA
TSVASGRSMDEIAEGKGRKPRPFMMAKADVEADAVWDSKHGLAADERKKKPREDVATSTA
ADLPDFIEPQLCDRLDRPPAGDDWLHEIKFDGYRIQMRVADGEVTLKTRKGLDWTSKYSG
IAEAASGLPDCIIDGEICALDENGAPNFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLFERKERLQNLLTAAGDDPRIRYVEHFQSGGDAVLRSACKLHLEGVISKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYAKTNGRFRSLLVGVHRGDHFVYVGRVGTGYGAKKVEMLL
PKLKALETTKSPFGGIGAPKKQAEVVWLKPELVAEIEFEGWTTDGLVRQAAFKGLREDKA
AKEVEAEKPAPPAQTETAGPAAAAKHKSARRKGAKAEVMGVLISNPDKPLWPDAGDGEPV
TKEDLARYHETVGAWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQIDRIEGLAAIAQIGGVELHPWNCQPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
QMRDRLDELGLVSFCKTTGGKGLHVVTPLTANKRKALSWAEAKGFAHDVCQQMARDNPDL
YLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARAGATVSMPLTWAQVKSDLDPKRFT
LRTVPALLTKSSAWQDYCDSERPLEQAIKRLGKSRHAA
NT seq 2637 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaacctctcgaaatacagggccaagcgcgatttcaagaagacccgcgaaccg
agcggggaagcgggcgtcaaaccgtcgaaccgccggcggttcgtgatccagaagcacgac
gccacacggcttcactatgacctcaggctcgagctcgacggcgtgttcaagtcctgggcg
gtgaccaagggaccctcgctcgatccgcatgacaagcgcctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggcacgatcccgaagggccaatatggcggcggc
acggtgatgttgtgggaccgcggttattgggagccggaaggccgcaagtctccggaagag
gctttgagaaaaggcgacttcaagttcacgctcgagggcaagcgactgcacggcagcttc
gtcctggttcggatgcgtcatgaccgcgatggcgggaagcgcacgaattggctgctgatc
aaacatcacgacgaacattcagtcgaggaaaacggtgcggcgatcctggaggagaatgcg
acctccgtcgcctccggccgcagcatggatgagatcgccgaaggcaagggccgcaagccg
cgaccgttcatgatggcgaaggcggatgtcgaggcggacgccgtgtgggacagcaagcat
ggtcttgccgccgacgagcgcaagaagaagcctcgcgaggatgtcgcgacctccacggcg
gccgatctgccagatttcatcgagccgcagctttgcgacaggctcgatcggccacccgcc
ggcgatgattggctgcacgaaatcaagttcgacggctatcggatccagatgcgggtcgcc
gatggagaggtgacgctgaagacgcgcaagggcctcgattggacgtccaaatattctggg
attgcggaagccgcgtccggactgcccgactgcatcatcgatggcgagatctgcgcgctc
gatgagaatggcgcaccgaatttcgccgcacttcaggcggctctgtcggaaggcaagacc
ggtaacctcgtctatttcgccttcgacctgctcttcgatggcggagaggacttgcggtcg
atgcgcctgttcgagcgcaaggagcggctgcaaaaccttctcacagctgccggcgacgat
cctcgcatccgctacgtcgaacatttccaatccggtggcgacgcggtgctgcgctccgcc
tgcaagctgcacctcgaaggagtcatctccaagcagatggacgcaccctatcagtccggc
cgcaccgacacctgggcaaagtcgaaatgtcgcgccggacacgaggtggtgatcggcggt
tatgccaagaccaacggcaggttcagatctctcctggtcggcgttcaccgcggcgatcac
tttgtctatgtcggccgtgtcggaaccggctacggcgcgaagaaagtcgaaatgctgctg
ccgaaactgaaggcgctcgagacgacgaaatcgcctttcggcggtatcggtgctccgaag
aagcaggccgaagtggtctggttgaagccggagcttgtcgccgaaatcgaatttgaaggg
tggaccacggacggcctcgtccgccaggctgccttcaagggcctgcgcgaggacaaggcg
gcgaaagaggtcgaggccgaaaagccggcgccgcctgcccagactgaaaccgcgggaccg
gccgcggctgccaaacataagtctgcccgccgcaaaggcgcgaaggccgaggtcatgggt
gttctcatttccaatcccgacaagccgctgtggccggacgccggtgatggtgagcccgtc
acaaaggaggaccttgcgcgctatcatgagaccgtcggtgcttggcttatcgagcatatc
aagggccgaccatgctcgatcattcgagcacccgacggcattggcggcgagcagttcttt
cagcgtcacgcgatgcccggcacttcgaacctgctcgaattggtgaaggttttcggggac
aagaagccttacttgcagatcgatcgtatcgaggggctggcggcgatcgcccagatcggc
ggcgttgaactgcatccgtggaactgccagcccggcaagccggaagtacccggccgtctg
gtgttcgacctcgaccctggtcctgacgtgccgtttgcgacggtggtcgcagccgcccgc
cagatgcgcgaccgtctcgatgaactcggcctcgtcagcttctgcaagactaccggtggc
aagggcttgcatgtcgtgaccccgctgaccgccaacaaacgcaaagccttgtcatgggcc
gaagccaagggctttgcccatgacgtttgccagcagatggcgcgcgacaatcctgacctg
tacttgatcaagatgaccaagagtctccgtggcggcaggatcttcctcgattacctccgc
aacgatcgcatggcgacggccgttgcgccgctctccccgcgcgcccgcgccggcgccacc
gtgtccatgccgcttacctgggcgcaggtgaagtccgatctcgacccgaagcgttttacg
cttcgaacggtgccggcgcttctgaccaaaagctccgcctggcaagactattgcgacagc
gagcggccgctggaacaggcgatcaagcgtctcggaaaatcccgacacgcagcgtga

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