KEGG   Rhodococcus hoagii: REQ_10780Help
Entry
REQ_10780         CDS       T01352                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
req  Rhodococcus hoagii
Pathway
req03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:req00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    REQ_10780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:req03400]
    REQ_10780
Enzymes [BR:req01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     REQ_10780
DNA repair and recombination proteins [BR:req03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     REQ_10780
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_OB_2 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: CBH47178
LinkDB All DBs
Position
1130562..1132802
Genome map
AA seq 746 aa AA seqDB search
MPTRTIDGRRVAVSRLDKVLYPATANGPAVTKGEVIDYYEAIAPAMLPHVVDRPVTRKRW
PNGVDEPSFFEKNLAASAPDWLTRHAVHHKDRAVRYPVIDSAAALVWIGQQAALEVHVPQ
WRFVDGEPGPATRLVFDLDPGDGVGLAECARVAAAVRDLVASLGWTAYPVTSGSKGIHVY
VPLDRTLAPGGASTVARKVATSLEQLHPDLVTATMAKSVRAGRVFVDWSQNNAAKTTIAP
YSLRGRAAPTVAAPRTWDELEDPGLRHLRFDEVLDRFRRDGDLIADLDPRMDALTEYRRK
RDADRTPEPIPQTAAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGLPTSSKE
NRLAVHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPEKWRDDEVIVRLSGQRAQG
RYALIRTEGDQWLMHLMKDDGGATDLPRGLAPMLATAGTLDGLEPEQWAFEGKWDGIRLI
VEFDGTTVRLRGRAGNDVTERYPALQALAAALDGHRVVLDGEVVSLDSHGNTSFPALQAG
GVPQFRAFDILYLDGVSLLRKRYDDRRRILDALAAATVGLDVPPQLTGSVADVRAQSKDL
EGVVAKRRDSIYLPGRRGTAWIKTKNWLTQEVVIGGWRRGRGAREAGIGSLLLGVPDKAG
LRYVGRVGTGFSERERERLIELLGPLERESSPFAGEVPDVDRDTVWVTPSVVGEVRYRER
TDAGRLRHPAWRGLRDDKSPDDVRIE
NT seq 2241 nt NT seq  +upstreamnt  +downstreamnt
atgccgacgcgcaccatcgacggacgacgggtggcggtgagccgcctcgacaaggtgctc
tatccggccaccgcgaacggccccgcagtgaccaagggcgaggtgatcgactactacgag
gccatcgcaccggcgatgctgccgcacgtcgtggatcgtccggtgacccgcaagcgctgg
ccgaacggggtcgacgagccgtcgttcttcgagaagaacctcgctgcgtccgcaccggac
tggctcacccgtcacgcggtccatcacaaggaccgggcggtgcggtacccggtgatcgat
tccgctgcggccctggtgtggatcggccagcaggcggcgctcgaggtccacgttccgcag
tggcgcttcgtcgacggcgagccggggcctgcgacgcggctggtgttcgatctcgatccc
ggtgacggtgtggggctcgcggagtgcgcgcgggtcgccgccgcggtgcgggacctggtg
gcgagcctgggctggacggcgtacccggtcaccagtggcagcaaagggattcacgtgtac
gtgccgttggaccggacccttgcgccgggcggggcctccactgtcgcgcggaaggtcgcg
accagcttggaacagttgcaccccgatttggtgacggcgacgatggcgaaatcggtgcgg
gcgggccgcgtcttcgtggactggagccagaacaacgcggcgaagaccaccattgcgccg
tactcgttgcgcggccgggcggcacccaccgtggcggcgccgcggacctgggacgaactc
gaggatcccggcctgcggcatctgcggttcgacgaggtcctcgaccggttccggcgggac
ggcgacctcatcgccgacctcgatccgcggatggatgccctcaccgagtaccgccgcaag
cgcgacgccgaccgtacgcccgaaccgatcccgcagaccgcggccgaaggcggcgagggc
aattcgttcgtgatccaggagcaccacgcccgacgcctgcactacgacttccgtctcgaa
cgtgacggagtgatggtgtcgtgggcggtaccccgcgggctgccgacgtcgtcgaaggag
aaccgtctggccgttcacaccgaggaccacccgctcgagtacgcaagcttcgcgggatcg
attcccaagggcgagtacggcggcggcaccgtgagcatctgggacgcggggacgtacgag
ccggagaaatggcgcgacgacgaggtgatcgtgcgactgtccgggcagcgggcccagggg
cgatacgcgctcatccgcaccgagggcgaccagtggctgatgcacttgatgaaggatgac
ggtggtgcaaccgatctgccccgcgggctcgccccgatgctcgccaccgccggcacgctc
gacgggctcgaacccgagcagtgggcgttcgagggaaagtgggacggcatccgactgatc
gtcgaattcgacggcacgacggtgcggttgcgagggcgggcgggaaacgatgtgaccgaa
cgctatccggcgttgcaggcgctcgcggcggctctcgacgggcatcgagtggtgctcgac
ggcgaggtggtgagcctggactcgcacggcaacaccagttttcccgcgctgcaggccggc
ggcgtcccccagttccgggccttcgacatcctgtacctcgacggggtctcgctgctccgc
aagcgctacgacgaccgccgacggatcctcgacgcgctggccgcggccacggtgggcctc
gacgtgccgccgcagttgacgggcagcgtcgcggacgtgcgcgcgcagagcaaggacctc
gagggcgtcgtcgcgaagcgtcgcgactcgatctacctgccgggtcgccgcgggacggcg
tggatcaagacgaagaactggctcacgcaggaagtggtgatcgggggatggcggcggggc
cgcggtgcccgcgaggcaggcatcgggtcgctactgctgggtgttcccgacaaggccggg
ctgcggtacgtcggacgggtcgggaccgggttcagcgaacgggagcgcgaacggctgatc
gagttgctcggacccctcgaacgcgaatcgagccccttcgccggcgaggtacccgacgtc
gaccgggataccgtgtgggtgacgccgagcgtcgtcggtgaggtgcggtaccgggaacgc
accgacgccgggcgcctgcggcacccggcgtggcgcgggctgcgggacgacaagtctccc
gacgacgttcgcatcgaatag

DBGET integrated database retrieval system