Rhizobium etli CFN 42: RHE_CH00126
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Entry
RHE_CH00126 CDS
T00317
Symbol
dnaX
Name
(GenBank) DNA polymerase III, tau subunit protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03030
DNA replication
ret03430
Mismatch repair
ret03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHE_CH00126 (dnaX)
03430 Mismatch repair
RHE_CH00126 (dnaX)
03440 Homologous recombination
RHE_CH00126 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ret03032
]
RHE_CH00126 (dnaX)
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH00126 (dnaX)
Enzymes [BR:
ret01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RHE_CH00126 (dnaX)
DNA replication proteins [BR:
ret03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RHE_CH00126 (dnaX)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RHE_CH00126 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DUF3646
DNA_pol3_delta2
AAA
AAA_22
AAA_16
AAA_30
AAA_5
AAA_19
AAA_14
AAA_24
RuvB_N
AAA_18
TsaE
SKI
SRP54
AAA_assoc_2
Rad17
DUF815
AAA_7
RNA_helicase
CbiA
AAA_2
nSTAND3
AAA_28
PduV-EutP
Viral_helicase1
ABC_tran
AAA_17
Motif
Other DBs
NCBI-ProteinID:
ABC88951
RhizoBase:
RHE_CH00126
UniProt:
Q2KDY5
LinkDB
All DBs
Position
complement(136339..138213)
Genome browser
AA seq
624 aa
AA seq
DB search
MSDSERLSQDAASTGTGYRVLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLT
GVRGVGKTTTARILARALNYKTAEIDKPTIDLRTPGEHCQAIMEGRHVDVIEMDAASHTG
IDDVREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR
KVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEPDALAMIARAAEGSARDGLSL
LDQAIAHGAGAVQAEAVRGMLGLADRARIVDLFQHIVKGDVAGALGEFQSQYEAGANPVV
VLTDLADFTHLVTRLKYVPDAANDPSLSEIERTKAAEFAKSIAVTTLSRIWQMLLKGIPE
TEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSGDNGGSRPSSAPSGGGGGGTRV
PYQSSVAARAPDIAPSKPQPSVPVAMLRAVPSSQPETTPVGRIEAKPAEAPKPLVKVNSV
GDIVNLATEKRDAKLKAMVRNFVRPVRIEPGRLDVSLTEGAPTTLLNELAVKLKEWTGIH
WIVSLSRDEGQPTLVEAEARTREQHVIDARQDPDVAAILAHFPGAKIIDVRVRAPEPEEE
GEVKPPAAAESEEGDILPGDDIEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagcgagcgactatcacaagatgccgcctcgacgggcaccgggtaccgggtg
ctggctcgcaaataccgccccaaggatttcacggacttgatggtcggccaggagccgatg
gtccgcacgctcaccaacgccttcgagaccggccgcatcgcgcaggcctatatgctgacg
ggcgtacgcggcgtcggcaagacgacgacggcgcgcatcctggcgcgggcgctgaactac
aagacggcagagatcgacaagccgacgatcgatctgcgcacgcccggcgaacactgccag
gcgatcatggaaggccggcatgtcgacgtgatcgaaatggatgccgcttcgcataccggt
atcgacgatgtaagagaaatcatcgagcaggtgcgctaccggccggtttcggcgcgctac
aaggtctatatcatcgacgaagtgcacatgctgtcgacccaggccttcaacggtctgttg
aagaccctggaagagccgccggagcatgtgaagttcatcttcgccaccaccgaaatccgc
aaggtcccgatcaccgtgctgtcgcgctgccagcgcttcgacctgcgccgcatcagcgcg
tcggatctcgtcgggctgttcacgacaatcgcggccaaggagggcatcgaggcggaaccg
gacgcgctggcgatgatcgcacgcgccgccgaaggctctgcccgcgacggcctgtcgctg
ctcgaccaggcgatcgcccatggcgcaggcgccgtgcaggcggaagcggtgcgcggcatg
ctcggccttgccgaccgcgcccggatcgtcgatctctttcagcatatcgtcaaaggcgat
gtggccggtgcactcggcgagttccagagccagtacgaggccggcgccaatccggtggtc
gtgctcaccgatcttgccgatttcacccatctggtgacgcgactgaaatatgtgccggat
gcggcaaacgacccttctctgagcgagatcgagcgcaccaaggcggcggaattcgccaag
agcattgcggtgacgacgctgtcgcgcatctggcagatgctgctgaagggcattccggaa
accgaaggctcgtcgcggacggcgggtgctgccgaaatggtgctgatccgccttgcgcat
gcggcgcatctgccggcgcccgaggatgcggcgcggcggcttgccgaattttccggcgac
aatggcggctcgcgcccttcctccgcgccttccggcggtggtggcggcggcacgcgagtg
ccctatcaaagcagtgtcgcggcacgcgcgccggacatcgcgcccagcaagccgcagcct
tcggtgccggtggcgatgctgcgcgccgtgccgagcagccagcctgagaccacgcccgtc
gggcggatcgaagcgaaaccggcagaagcgccgaagccgctcgtcaaggtcaattcggtc
ggcgatatcgtcaacctcgccaccgagaagcgcgatgcgaagctgaaggcgatggtgcgc
aatttcgtgcgcccggtgcgcatcgagcccggccggcttgacgtcagcctcaccgaaggc
gcgccgacgacgctgctcaacgaacttgccgtcaagctgaaagaatggaccggcattcac
tggatcgtcagcctcagccgcgacgagggccagccgacactggtggaggcggaagccagg
acccgggaacagcatgtcatcgatgcccgccaggaccctgacgtggcggcgatcctggcg
cattttcccggcgctaaaatcatcgacgtgcgcgtgcgggcacccgaaccggaagaagaa
ggcgaggtcaaaccgccggccgccgccgaatccgaagaaggcgacatcctgcccggcgac
gacatagaattctga
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