KEGG   Rhizobium etli CFN 42: RHE_CH00617Help
Entry
RHE_CH00617       CDS       T00317                                 

Definition
(GenBank) putative DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ret  Rhizobium etli CFN 42
Pathway
ret03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ret00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHE_CH00617
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ret03400]
    RHE_CH00617
Enzymes [BR:ret01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHE_CH00617
DNA repair and recombination proteins [BR:ret03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHE_CH00617
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S NdhM
Motif
Other DBs
NCBI-ProteinID: ABC89433
RhizoBase: RHE_CH00617
UniProt: Q2KCK3
LinkDB All DBs
Position
complement(635560..637539)
Genome map
AA seq 659 aa AA seqDB search
MALETCQAKRNFKLAPKSKDGKAVAAKRPAAKARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKIRMLTRSGLDWTEKFGREVLEAFAALPV
QSAAIDGEIVVERDTGASNFSALQHDLSEGRNDRFVFYAFDLLHFDGYNLVDVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGGLVLDHACRLSLEGMISKLRDSKYRSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAVGYYQGGELKYVGRVGTGYTAATAQMLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKPAKDVTRE
MEKTTAPLLPKSAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIEEITDPKDKQGEKLLRITDFDGIVALVQSAVLEIHPWG
ASTDNWEKPDMITMDLDPDDEVAWADVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWAEVKGFAKWLADSMSADRPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTIEVGPAYFTVDNAPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq 1980 nt NT seq  +upstreamnt  +downstreamnt
atggccctcgaaacctgtcaggcgaagcgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggttgccgccaaaagaccggcagcaaaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgatttcatcgaaccggcgctt
gccaagctgaagccgaagccgccggcgggtgaccgctggattcacgaaatcaagtttgac
ggctaccggctgcaggtcagagtcgagaacggcaagatcagaatgttgacccgcagcggc
ctcgactggacggagaaattcggccgcgaggtgctagaggcctttgccgccctgccggtg
caatcggcggcgatcgatggcgaaatcgtcgtcgagcgcgataccggcgcctcgaacttc
tcggcacttcagcacgatctgagcgagggccgcaacgatcgcttcgtcttctatgccttc
gatcttctccacttcgacggctacaacctcgtcgatgtggcgctcatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgttacagcgcgcatttcaac
gaaagcggcggcctcgtgctcgaccatgcctgtcggctcagcctcgaagggatgatttcc
aaactgcgcgatagcaaatacaggtcgggacgcaaaggtgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcggtgggctattaccaaggcggtgaactcaagtatgtcgggcgcgtc
ggcaccggatatacggcggcaaccgcacagatgctctatgagaaactgtcgcgtctgacg
cagaacgagaattcattcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaggtcgagttccgagcctggtcggccgacggcaatctg
cgccatgcggcctttcgcggcctgcgcgaagacaaacctgccaaggacgtgacacgcgag
atggaaaagaccacagcgcctctcctgccgaaatcggcagtgacactcacccatcccgac
cgcatctattggccggacgagggtgttaccaaagaggggctggcgaattattatgcccag
gtctggcgcttcatggcgccctatgtcgtcaaccgccccttggcgcttctgcgcctgccg
gacggaatcaacggccggcagcgctttttccagaaacatgcctggaaaggcatgaatccg
catatcgaggagatcaccgaccccaaggacaagcagggggagaagctgctgcggataacc
gatttcgacggcatcgtggccctggtgcaatcggccgtgcttgaaatccacccctggggt
gcttcgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccgatgac
gaggtggcgtgggcagatgtgatcgccgccgcttacgaattgaaggagcggctggaggcc
gaaggcctcgccgccttcgtcaagacctcgggcggcaaggggctgcatgtggtgacgccg
ctcacgccgaaggccggctgggccgaggtgaagggtttcgccaaatggcttgccgacagc
atgtccgccgaccgtccggaccgttatctggcgacggcgacgaaggccaagcgcacgggg
aggatcttcatcgactatctccgcaacggccgcgggaatacggcggtcgcgccctattcg
gcacgggcacggccgggtgcggcggtctcgatgccgctggaatggagcgaactcaccatc
gaggtcggaccggcctatttcacggtggacaatgcgccgacccggctcgacgcgctgccg
cgtgatccctgggacggatttttcgccgcggcgaaaccgttggaaaagaagaagcggtag

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