KEGG   Rhodococcus erythropolis CCM2595: O5Y_21290Help
Entry
O5Y_21290         CDS       T02806                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rey  Rhodococcus erythropolis CCM2595
Pathway
rey03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rey00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    O5Y_21290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rey03400]
    O5Y_21290
Enzymes [BR:rey01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     O5Y_21290
DNA repair and recombination proteins [BR:rey03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     O5Y_21290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AGT94081
LinkDB All DBs
Position
complement(4685140..4687422)
Genome map
AA seq 760 aa AA seqDB search
MATTDRGQITLDGTTVSVTNLGKILYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPQWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGEGVGLAECAEVARSIRDLVATLGWTAYPVTSGSKGIHL
YVPLDRALDGSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRDQPYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTL
THYRNKRSADRTPEPIPAAVTIETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGV
PTSAGENRLAVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWREDEVIVRLS
GERVQGRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDPQEWAFEG
KWDGIRVILEYHSGTMSLRSRAGNDKTRDYPALAGLAEVLDGHDVVLDGEVVAYNDAGVT
DFGLLQRGGEPVFLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAEN
ALEVSTDAGWEGIVAKRRASVYLPGRRGASWIKVKNWRTQEVVIGGWRTGQGNRAQGIGA
LLMGIPGEDGLTYVGRVGTGFSDRDLESLLAVLEPLRQKESPFEEELPADDRKGAVWVRP
ELVGEARFMDWTATGRLRHPSWRGLREDKKPGDVVRETRQ
NT seq 2283 nt NT seq  +upstreamnt  +downstreamnt
atggcaacgacggatcggggtcagatcactctcgacggcacaaccgtgtccgtgaccaat
ctgggcaagatcctctaccccgagagcggcaccacgaaggccgaagtcatcgactactac
acccgtatcgccgcagtcatgcttccgcatgtcgtcggtagacctggtactcgtaagcgt
tggcccaacggtgtggacggtcagtccttcttcgagaagaacctggcgtcgtctgccccg
cagtggctcacgcgtgcgtcgctgcagcattctgatcgcgtcgtcacttacccgatcttc
gattccgttgcatccctggcgtggctggggcaacaggcggcactcgaattacacgttccc
caatggcgattcgacggttccgagcgtggtccggcgacacgactggtattcgatctcgac
ccgggcgaaggcgtcggattggccgagtgcgccgaggtggcgaggtcgattcgagatctg
gtcgcaactctggggtggactgcctatccggtaaccagtggtagcaagggaatccacctc
tacgtaccactggatcgagccttggacggcagtggtgcgtcgactgtcgccaagcagatc
gccaccgggctcgagaagcttcacccggatctcgtcaccgcgacgatggcgcgaaatgtc
cgggcaggcaagatcttcgtggactggagtcagaacaacgcagccaagaccaccattgcg
ccgtattcgatgcgcggccgcgatcaaccctatgttgccgcgccacgcagttgggacgaa
ctcgacgatccgaaactgcgccacctgctgttcgacgaggttctggagcgcgtcgaatcc
gacggtgatctgctgggcgatctggatccgccggtctcggcggctgtagccgatacgttg
acgcactatcgcaacaagaggtcggccgaccggacaccggagccgatccctgctgcggtg
accatagagacagcgggcaatacctttgtgattcaagaacatcacgccagacgattacat
tacgacgttcgcctcgagcgggatggtgtgctcgtgtcctgggcagtcccgaagggtgtg
ccgaccagtgccggagaaaatcggttggccgtgcacaccgaggatcatccgctcgaatac
gccacattctcgggcacgattccgaaaggggagtacggcggaggttcgatgacgatctgg
gattccgggacatacgagaccgagaagtggcgcgaagacgaggtgatcgtgcgcttgagt
ggggagcgggtgcagggacgcttcgcgctgatccggacaaagggtgatcagtggttgatg
catctgatgaaggatcagaacgcgagtttcggaacggagtttcccaagaatctcgagccg
atgctcgccaccgctggaacgctcgaaggtctcgacccgcaggagtgggccttcgaagga
aagtgggacgggattcgagtgattctcgaatatcattcgggcacaatgtcgcttcgcagt
cgcgcgggtaacgacaagacccgggactatccagcccttgccgggttggccgaggtgctg
gacggtcatgacgtggttctcgacggtgaagtggtggcgtacaacgacgcgggagttaca
gatttcggcctcctccagcgaggtggggaaccggtgttcctggccttcgatcttctgtac
ctcgacggagtgtctttgctgcggaagtcctattcggatcgccgcaccgtgttgaatgcg
ttggcgggcaaggtcggtgagctcgaggtaccaccgcagatcgagggcacggcggagaac
gccttggaggtgagtaccgatgccgggtgggaagggattgtcgcgaaacgtcgtgcatcg
gtctaccttccagggcggcggggggcgagttggatcaaggtgaagaactggcgcacccaa
gaggtggtgatcggtgggtggcgcaccgggcagggcaatcgagcgcaggggatcggggcg
ctgctcatgggaattccgggtgaggacggattgacctacgtggggcgcgtcggtaccgga
ttcagcgatcgtgatttggagtcactgcttgcggtgctggaaccgttgcgtcagaaggaa
agtccgttcgaggaggaacttccagcagatgaccgcaagggtgcggtgtgggtgaggcct
gaactcgtcggtgaggcgcggttcatggattggacggcgaccggacgccttcgccacccg
agttggcggggtctgcgggaggacaagaagccgggcgacgtggtgcgggaaacaaggcaa
taa

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